HsaINT0086967 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7611517-7613163:+
Coord C1 exon
chr19:7611517-7611586
Coord A exon
chr19:7611587-7611686
Coord C2 exon
chr19:7611687-7613163
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCTCCCTCCGGCCGCCCAGCCG
3' ss Score
3.81
Exon sequences
Seq C1 exon
GCTCCCTGAAGTCTTCCCCGTCCATGTCCCATATGGAGGCCCTGGGCAAGGCCTGGAACCGGCAGCTCAG
Seq A exon
GTGAGTAGACCTCACAGGCCAGGGTAGGGGGTGGAGCAGGCTAGGGCGGGTTGGGGCCGAGGCTGGTCCCAGGGGCTGACCCCTCCCTCCGGCCGCCCAG
Seq C2 exon
CCGTCCCCTCTCCCAGGCTGTGTCATTCAGCACCCCCTTTGGCCTGGACAGCGACGTGGATGTCGTCATGGGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCTGGGCCCCCCGCGTCCCGCGCCGGCCAGGACCCCCACCCAGCCACCCCCGGAGCCTGGTGACCTGCCCACCATCGAGGAAGCTCTGCAGATCATCCACAGTGCCGAGCCCCGGCTCCTCCCAGATGGGGCGGCCGACGGCAGCTTCTACCTCCACTCCCCTGAGGGGCCCTCCAAGCCATCCCTGGCCTCCCCCTACCTGCCCGAGGGGACCTCCAAACCACTGTCCGACAGGCCCACCAAAGCACCAGTGTACATGCCACACCCCGAGACCCCCTCGAAACCATCTCCCTGTCTGGTGGGGGAGGCATCGAAACCGCCAGCCCCATCCGAGGGGTCCCCGAAGGCGGTGGCTTCGTCCCCAGCAGCCACCAACTCCGAGGTGAAAATGACCAGCTTTGCAGAACGCAAGAAACAGCTGGTGAAGGCAGAGGCTGAGGCCGGAGCGGGGTCCCCCACGTCCACTCCGGCCCCGCCGGAGGCCCTGAGCTCGGAGATGAGTGAGCTCAGCGCCCGGCTGGAGGAGAAACGCAGAGCCATCGAGGCTCAGAAGCGACGGATTGAGGCCATATTCGCCAAGCACCGCCAGCGGCTGGGCAAAAGCGCCTTCCTGCAGGTGCAGCCGCGGGAAGCCTCTGGGGAGGCGGAAGCAGAGGCGGAGGAGGCCGATTCCGGTCCAGTCCCTGGTGGGGAGCGGCCCGCAGGCGAGGGCCAGGGTGAGCCAACCTCACGGCCCAAGGCAGTGACCTTCTCGCCAGACCTGGGCCCGGTGCCCCACGAGGGGCTGGGGGAATACAATCGAGCGGTCAGCAAGCTGAGTGCCGCCTTGAGCTCGCTGCAGCGGGACATGCAGAGGCTCACGGACCAGCAGCAGCGGCTCCTGGCCCCGCCCGAGGCCCCCGGATCCGCCCCACCACCTGCTGCGTGGGTCATCCCTGGCCCCACGACGGGGCCCAAAGCTGCATCCCCCAGCCCCGCCCGGCGAGTCCCGGCCACCCGGCGCAGCCCTGGGCCCGGGCCCAGCCAGTCACCCCGCAGCCCGAAACACACGCGGCCAGCGGAGCTGCGGCTGGCACCCTTGACCAGGGTGCTTACGCCACCCCACGACGTAGACAGCCTCCCCCACCTGCGCAAGTTCTCGCCGAGCCAGGTGCCCGTGCAGACGCGCTCTTCCATCCTCCTGGCGGAGGAGACGCCCCCCGAGGAGCCAGCCGCCCGGCCGGGCCTCATCGAGATCCCGCTGGGCAGCCTGGCAGATCCCGCCGCCGAGGACGAGGGAGACGGGAGCCCCGCTGGTGCTGAGGATTCCTTGGAGGAGGAGGCGTCTTCGGAGGGGGAGCCCCGGGTGGGGCTGGGGTTCTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTCCCATATGGAGGCC
R:
TGATCTGCAGAGCTTCCTCGA
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development