DreINT0005701 @ danRer10
Intron Retention
Gene
ENSDARG00000091359 | CAMSAP3 (2 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr1:58397390-58399561:-
Coord C1 exon
chr1:58399531-58399561
Coord A exon
chr1:58399218-58399530
Coord C2 exon
chr1:58397390-58399217
Length
313 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTTCATGTTCTCTCTCTTAGCCG
3' ss Score
7.14
Exon sequences
Seq C1 exon
AAGGACGGGGATGGAGCAAAAAGCAAATAAG
Seq A exon
GTAATTGTGCTTCAGTTCAATAAAGTGTGTAGGAAATACAATTCTGACTTATTAGTCCAGGGGTCACCAAACTTGTTCCTGGAGGGCCGGTATCCTGAAGATTTTAGCTCCAACCCTAATCAAACACACCTGAACAAGCTAATCAAGGTCTTCCTAGACCCTGCAGGGACACCGGCCCTCCAGGACCGAGATTGGTGACCCCTGTATTAGTCGAAATGTTTTTGATATATTGAAAAATTCCTATACTTCTGAGAATAAAGCAAATTTGTCATGCCCTAGGAATCTTCAGTGATGTTCATGTTCTCTCTCTTAG
Seq C2 exon
CCGTCCTCTCTCGGCGGTGACCTTCAGCATCCCGTTTCCGCTGGACAGTGATGTTGATGTTGTCATGGGCAACCCTCTCTTCCGCTCTGTCAGCACGGACAGTCTCACTATGGTAACCAACCCTGACCCTTACACTCCTCCAGAGGATCTCAGTAAACTCATTGGTCATGCTCCTCTAGGAGAGCTGCCTACTATAGAAGAAGCATTACAGATCGTTCACACTGGCCGTGTGGTACACAACGAGCCGCGTCTGCGGCCAGAGGGGGCACCATCTGGCTTTTACCTCCACTCCCAAAATGAGGGTGGAGCCAAACTCAGCAGCTCTGCTCCCTGCCGGTCAGGGATTATGTATCGACCCATTGGAGGAGGGCCTGATAACAGCGGGAACCACAAACGGCAAGATGGAGGTTCAGAATGTGCCACGCCTGACTCTCCCAAAACCTCCAGCCCAGCCAACGGACCCAAGTCTGGCCGCATGACAAACTTTGCTGAGCGCAGAAAAATGATGCCTGAATCCCCAAGCAATTCCAGGTCCCAGGAGCGGGAACCTTTGTTCAGCCCTGCAGCAATGAGCCCTGTTGGGGCAATGGAGGCGCAGGAGCTGGGTGCACGTCTGGAGGAGAAGCGGAAAGCAATTGAAGCTCAAAAGAGGAGGATTGAGGCCATCTTTACCAAGCACAGGCAAAGGCTGGGCAAAACTGCCTTCCTTCAGCTCCAGAAGAAACAAGAGGGAGAGGTGGAGGAAGATGGACAGTCCATCTCTCTGGATGAACGACTCACACAAATGGAGCAGCAGCTTCAACAAGTGGAGGACAGAGAGAAGGAGGAGGAGAAAAGAAAGCAGGAAGAGGGGAAGAGAGAAAAGGATGGGGAGGAGAAGAAGAGTGATGTAGTAGCTCCACCAAAACTAGAGAAACAGGTGACCTTTTCTGTTGAGGCAAAGAAAGAGGAGGGGAAAGAGCCACCGTTGGGGGAATATAACGAGGCAGTAGCTAAGCTAAGCTCCACCCTGGAGACTCTGCAAAGAGACATGCAGCGCCTTACAGAACAGCAGCAAAGGCTCATGGGAAAGAAAACTTTGAGTTCTCCAAAAAACATCCCCTCAAGCAAGACCTCAGCATCCAGCAAGGCCTGGATTATTCCATCTGGTCCCAAATCCCCCGCTACACCACCTCATCTTTCTAGAGACTCCACTCGCATCATTTCACCCTCTGGCTCTCCATCACGCTCTGGACAACTTTCAGACACACCGAGATCCCCTAAAAGCTCTGCAGCATCCACCCCTCGTAGATCCCGTAGTTCTGCTCCCAAGAGTCCTAGGCGTCAACGACCCTCCCGCCCCACGGACCTTGGCTTCCAGCCTATCACACGTGTCCTAACACCGCCGCAGAATGTGGACACCCTTCCCCATTTGCGCAGAGTCTCTCCAAGCCAGTGTCAGGTGCAGACCAGCTCATCTCTGCGGCTCGGAGGTCCGTACACCCCACTGGACTCTTCACCCCAACCTGCCCCTGCTCAAGAGAACACATCAGAGTCAGGCTCCAGTGACCACAACACTCCAATCTTCAGTCTTGAGCTAGAGGCTGGACCTCCGTCTGCACTCCCAGCGGAGCTGTTAGGAGGAGCAGGCAGCTCTGGAGCTCCATCAGAGTGCTCGTTTGAAAGTGACTTGCTTTTGAGCAGTGCCCCCGTGAAAGACGAGACGGAGGGTGCCGGAACGATGGGAGATGACACCGATTTAGAGCAGGGTGCAGAAATATTCTCATCAGATTCCATGAGTGACCAGACTGAGAGTGAGAGCCGGCTGGGACTTGATGTGTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091359:ENSDART00000128742:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.928
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGGGATGGAGCAAAAAG
R:
TGAGTTTGGCTCCACCCTCAT
Band lengths:
346-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]