DreINT0007157 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62728517-62729292:-
Coord C1 exon
chr5:62729121-62729292
Coord A exon
chr5:62728807-62729120
Coord C2 exon
chr5:62728517-62728806
Length
314 bp
Sequences
Splice sites
5' ss Seq
GAGGCACGT
5' ss Score
2.45
3' ss Seq
CTGTTCTCGTGTCTCCTCAGATG
3' ss Score
11.75
Exon sequences
Seq C1 exon
GCCCCTAGTTTGGGATCTCAGGGCACACAAGACTCAGGATTAGGTTCTGTGCACCCTCACTCCCCCGAGAGGAACCGGCGGTCCGGCAACAGAGCATGCAGAGAGAGAAGACCTCCTGCTAATGGAGGATACTGGGTCTATTCTCCTAATCCTTACTCTCATGGAAAGAGAG
Seq A exon
GCACGTTTTAGCATCTTTCTCTCCAACATCGTCATGTTTAAGGACAGGCATGTGCACAGACAGGGCTAAACCTGTGCAGTGTACATGGACTTTTTTCTCTTGGATATAAAATGCACTTAACTCCAATCTTGCTGAACGAAATGCCTATTTCGCTACATTCAATCAGCTCGCAGCAAAAAAAAAACAAGCCCTGCCCACTGCTTTCTTATTTAATATTCCATTTCTCTAGGAACTGTGTCACAAAAATAAAAGAGTGGCAGCTTCCAGTTAATGCAGACTTTAAAGCTGTAATATCTGTTCTCGTGTCTCCTCAG
Seq C2 exon
ATGCTCAGGTGTCCAGAGACAGTGGAAGAGAGAGTGACATGGAGGGAACTCGCTTCACACCTTTATCTGCTCCTGCTGGATTTACTCTACATGATAGCACTGCTTTTCCTCCTGGTTCATTTATTTACAGTCATTCTGTTCCGGGGCTTCCCATTGGAGCCAGCACAGTCCTCTATGGGCCTCCTCCTGATCCAGCGAGGCTGGTTTATGGACCTCCTCCTGCAAATCTGACTGTTCCCCTGGTACCCAGTGGGACGTTGCACTGTAATGTGCCTGGACATCAGGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138631=DUF4200=PU(4.2=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGGCACACAAGACTCA
R:
GAGGAGGCCCATAGAGGACTG
Band lengths:
343-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]