MmuINT0034546 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35151680-35153473:+
Coord C1 exon
chr2:35151680-35151869
Coord A exon
chr2:35151870-35153156
Coord C2 exon
chr2:35153157-35153473
Length
1287 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTTTCCTGTTTATGTCTTAGAAG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTCCAGCCATAGTTCTCAGGCCACCAAGGACTCCGGTTTGGGTCTAAAGTACACAGCCTCAACTCCTCTTAGAAAACCACAGCCTGGACAGCAAGAAGAAAAGGACAGCAGTGGACCTCTGCCTGCTTCAGGGTACTGGGTCTACTCCCCCATCAGAAGCACGCTGCATAAGTCATTTTCAAAGAGAG
Seq A exon
GTAGGCCGCATTGCATAAGGAAAGCTTCACTTTTCTTACCTAGTTAATAACCTCTTACCGTTCCTTGAAATAAATAGATGCATCCCAAAGTCTTTTCTTACTCAGGTATCCTGTGGGACCCTGTATTGTTGACTAGTAACCTATCTTCCCATAGGGTTTCTATCTAAAGCAGTGTTTCTCAACCTGTGGGTCACAGCTACTTTGGAGTCAAATGACCTTTTCACAGATGTCCTACATATTAGATCTTTACAATTGGTAACAGTAGCAAAATTACAGTTGTGATGTAGCAATGAAAATAATTTTACAGTTGGGGGTTACCACATGAGGAACGGTGTTAGTGGGTTACAGCATTAGGAAGGCTAAGCTGCTGATCTATAGATACCTGCAGCATGCCCGCTTCTCGGGGCTCTCTGCCTTTGTTTTCAGTGCTGTGGGTTGAGCACAGGGCCTAGCATATGCCACCAAGTTACAGTCTCACCCCTACACCTCCACATTTTAAACCACTTTTCTGTAATCCCAAGCCATCCTGTGGTTTAGTGAGACGGCTCACTGCATGGTTCTTCCCTCCACTCTCCTTCTTCCATTCCAGCTGAGCAGCGTCTTGGCTTATGCTTCTGAGTCAGGAGCATTGTACCATTTATTTTATCATGACTTTACTAAAATTGTCAGAGGTTAGTCTTCTAACCTCTGCACAAAGAGTAAGACTTGGATCCGTCTAAGCTCTTGTATTGTATAGCTCTGTGGCCATAGTCCAATCATTTTGCTGCTCTGAGACAGTTGATCTACATGACTTGGTAGTGCTCCATTTTGATGATCTGTTAATTAAGGAAGTGTTTCCTGGGATAGGAATGTATCTCATTGTTAATATAACCCCTAACAGCACAAAAGCAAACAAACAGGGACTATTACTGGGAAAGTGCCTACTGTGTGCTTGCTTTATTGTCGGGTTAGCAGACATAGCCCTTGCCTTTAGGGAATAAGAAAGAAGTAATCCATCAAATTAGAGTGGCACATGTGGCGGCAATCAATTTAGAGTTCTGTCTGACCTAACACATCTCTGTTGGTATTTTATATAGTATGAAGCACATATGCAAATGATTGCTGAATACATTAATAATTAATGGTGACTAAATATGAGATGTTGGCTTCTGAAAACACTTTGTATTGATCTGCTTCTTATACCTACAGCTGATCATTTTCACAGTTGTTTTCCATCTCCAGTGTCTTGATTGAAGTACTGTTGTTTCTTCCTAAATCTGTTTTTCTCCTTTCCTGTTTATGTCTTAG
Seq C2 exon
AAGATGCAGACAGTGGAGGAGATAGCCAGGAAGAAAGTGGACTGGATGACCAGGAGGAACCCCCATTTGTGCCTCCCCCTGGGTACATAATGTATACTGTACTTCCTGATGGTTCTCCTGTACCCCAGGGAGTGGCCCTGTATGCACCATCGCCTCCATTGCCCAACAGCAGCCATCCTCTGACCCCCGGCACTGTGGTTTATGGGCCACCTCCTGCTGGGGCCCCCATCATATACGGACCTCCTCCTGCCAACTTCGCTGTTCCCCTTGTCCCCGCGGGTGTGCAGCATTGCAACATCCCAGAGCACCATAACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCATAGTTCTCAGGCCAC
R:
AATGGAGGCGATGGTGCATAC
Band lengths:
345-1632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types