GgaINT0126671 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9067748-9068478:+
Coord C1 exon
chr17:9067748-9067925
Coord A exon
chr17:9067926-9068158
Coord C2 exon
chr17:9068159-9068478
Length
233 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATAACTTTTTTTTTTCCTGTGT
3' ss Score
0.24
Exon sequences
Seq C1 exon
GCCTCAACCCCTGCCTCCCACAGCACAAAAGATTCTGGAGTTGGTTTACAATATCCTGGCACATCCCCACCCAGAAGAGGGTGTAGTCAGGTCAGGAAGGAAGACTTACCCAGGTCAAGAGGGTGCTGGGTTTATTCACCAGTCAGAAATAGGTTACACAAAACAAATCTTGATAAAG
Seq A exon
GTGAGTCTCATGGTCTCAGGATGTGCAGGAGCATAGTAAACATGGGTTTGCTTAGAATTCGTAGTGAATATTTCTGATACCTATGAGTGAATAATTAATATTTATTTCAGGTGAATTTGTTAAACAGTGCTAAAAGTAAATATTTGTGTATACGCACTTTGTATTACTTTAAAGTGCGCAATTCAAGAAATTTTTCTTTTAAAAGTGAATAAAAATAACTTTTTTTTTTCCTG
Seq C2 exon
TGTATAAAGCTGGAAGAGCAAAAGAAGACAGGGAAGGAAATGAGGAAGCTCATGCTCACAAAGACCCACCCTTTGTACCACCACCTGGTACAGTTATCTACACAGTCCTCCCAGATGGTGCTCCTCTACCCGAAGGAACTGTGGCTTATGGCCCTCCTCCTGCAGCTGCAAATGGAGGTTCGATTGCTCCTGGGTCTGTTATCTATGGCCCACCTCCTGTGGGAGCTCAGGTTGTTTATGGCCTTCTTCCTCCAAACTTCACTGTCCCACTCATTCCTTTTGGAGATCTTCACTGCAATGTACCCAAGCATCATGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.589
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCACAGCACAAAAGAT
R:
AGTTCCTTCGGGTAGAGGAGC
Band lengths:
306-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]