HsaINT0033499 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121148672-121150483:+
Coord C1 exon
chr9:121148672-121148861
Coord A exon
chr9:121148862-121150169
Coord C2 exon
chr9:121150170-121150483
Length
1308 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCTGTTTATTTCTTTGAAGATG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GTTTCCAGCCATAGTTCCCAGGCCACCAAGGACTCTGGTGTTGGCCTTAAGTACTCAGCCTCAACTCCTGTTAGAAAACCACGCCCTGGGCAGCAGGATGGGAAGGAAGGCAGTCAACCTCCCCCTGCCTCAGGATACTGGGTTTATTCTCCCATCAGGAGTGGGTTACATAAACTGTTTCCAAGTAGAG
Seq A exon
GTAAGTCAAATCACATAGGAAAGTTGCATTTCTCTTGCCCGTTTAATAACCTTTTACTGATTCTCTGAAACCCCTAAGACACAATCCAGACTCCTTAGCTAGCTCCATGAGGTCTTCTGTGATCTGGTCTTGGCCAGCGACCTCTTGTCGTTGTTTTAAACCCTGTCTGGAATGTCCTTCCTCCTTCCCTTCCCATGGTGATGCCTACTCATCCTTCAGTGAGACCTAGGTCCTCAAACAATGCTCCTAAATGGAGCCTTCTTCCACCCTGCTTCACCCAGGCTGACTAAGCAGCCTCTTTGACTGTACTGGAGCATGGTGTCTTGTGTCCTTGCATCACGGCATTAATCTCATCCTCCTAAAATGAAGTGTTACGGGTCTGTCTTCCAAAGCTCCAGAGGAAGAGTCAGACCTGAGTAAATCTTTTTCACTTATTAGCTGTGTGGTCTTAGGCTAATTATTTAGCTGCTGTGAAACTGTTAATCTGTAAAATGTGAATACTACCTTCTGAGAATTTGTTCATTCAGAAACTTTTTTTTGTTTTTTGTTTTTTTTTTTGAGAGGGAGTCTCGCTCTGTCACCCAGGCTAGAGTGCAGTGGCACAATCTTGGCTTACTGCAACCTCCGCCTCCTGGAATCAAGCAATTCTCTCTCCTGTTTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGCACCACCATGCCTGGCTAATTTTTATATTTTTAGTAGAGATGAGGGTTTCACCATATTAGACAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTATGTGTCCAGGAAGTGCTTATTGACTGCCTGCTGTGTGCTAGGTTCTCTGTTGTCAGTGATCAGCAAACATATTTCCTGGTTTTAGGGCAGATAAGTTAGTAAGCTATCACGTTGGAGAGTGTTACATGTCATGACAGTGGTAAACACTGAGTGCTGTAAGATCTTGTATGTAGCATGAATTAGATACCCAGATGGTCACTTAATAAATTAATGAATAAATTAGCAAATGCAGAAACAAACCAACAGATAAACATAAGAAAAACTCAAGTATCAGCCATAGAAAATACTTTGAATCCATGTTTTGAGCTGCTTTTCAAAAATAGTTTTGACCTTTTTTTCAGAGTTTTATTCTCACATCTGCAGTATCTTGGCTTAAATGCTGCTGTTCTCTACTAAATTTGTTTACCTGGTAAACCATGGGGGTAAAACACTCTTTTGTTGAATAAACTCTTCTGTTTATTTCTTTGAAG
Seq C2 exon
ATGCAGACAGTGGAGGAGATAGTCAGGAAGAGAGTGAGCTGGATGACCAAGAAGAACCCCCATTTGTGCCTCCTCCTGGATACATGATGTATACTGTGCTTCCTGATGGTTCTCCTGTACCCCAGGGCATGGCCCTGTATGCACCACCTCCTCCCTTGCCAAACAATAGCCGACCTCTCACCCCTGGCACTGTTGTTTATGGCCCACCTCCTGCTGGGGCCCCCATGGTGTATGGGCCTCCACCCCCCAACTTCTCCATCCCCTTCATCCCTATGGGTGTGCTGCATTGCAACGTCCCTGAACACCATAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=NA C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGGACTCTGGTGTTGG
R:
GAGGTCGGCTATTGTTTGGCA
Band lengths:
344-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development