RnoINT0038564 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14344310-14346217:+
Coord C1 exon
chr3:14344310-14344499
Coord A exon
chr3:14344500-14345900
Coord C2 exon
chr3:14345901-14346217
Length
1401 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTTTCCTGCTTGTGTCTTAGAAG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTTTCCAGCCATAGTTCTCAGGCTACCAAGGACTCCGGTTTGGGTCTAAAGTGTACAGCCTCTACTCCTCTTAGATCACAACAGGCTGGACAGCAAGAAGAGAAGGGCAGCAGTGGACCTCTGCCTGCTTCGGGATACTGGGTCTACTCACCCATCAGAAGCACACCGCATAAGTCATTTTCAAAGAGAG
Seq A exon
GTAGGCCATCACACAAGGAGAGCTGCATCTCTCTTACCTAGTTAGTAACCTTTTATTGTTCCTTGAAATCCACAGCCTCATTCCTTCCAAAGTCTTTCCCTATGCTGATATCCTGTGTGATCCTGTGTTGCTGACTAGTAACCTATCTTCCCTTAGGCTCGCTATCTAAAGCCACATTTCTCAACCTCTGGTCACAACTACTTCAGAGTCAAGTGGCCTTTTCACAGGGGTCACATATCAGATCTTTACAATTTGTAACAGTAGCAAAATCACAGATGTGAAGTAGCAATGAAAATAATTTTATAGTTGGGGGTTAGCACAACATGAGGGACTGTGTAATGGGTTACAGCATTGGGAAGATGGAGCCGCCGATCTGAAGATACCTGCGGCCTGCCCTGTCCCTCGGGCCTCTTTGCCTTTGTCTGTTTTCAGTGCTGTAGGTTGAACACAGGGCCTAGCACATGCCAGGTAAGCATTCTGCCACCAGTTACAGTCTCACCCCTACACCTCACGCTTTAAACCACTTTTCTGTAATCCCAAACCAGTTCATCCTCGTGGTTTAGTAAGACTGTGCTCACTGCACGGTCCTGCTCTCCACTGCTTCCTCCATTCCGACTGAGCAGCGCCTTGGCTTGTGCATCTGAATCAGGGGGTATTGTACCATTTATTTTGTCATGGTTAGTCATCCAACCTCTGTACAAAGAGTAAGGCTGGGATACGTCCACGCTCTTCATACCTCTGTGATCCTAGCATCATTTGATTTGCTGCTGTGAGATTGTTGATCTACATGACATGGTAATGCTACATTTTAATAATTTGTTAATTAAGGAAGTATTTGCTGGGATAGGGATGTATCTCATTGTTAGTCCAACCCCTAGCAGCACAAAAGCAAACAAACAGGGACTCTTTACTGGGAAAGCGCCTACCGTGTGCTTGCTTTGTTGTCAGGTTAGCAGACATGACTCCTGCCTTCAGTAGATAAGAAAGAAGTAAGCCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAGAAGTAAGCCATCAAGTCAGAGAGTGGCACGTGTCATAGCAGTAATCAATTCTGAGTTCTGTGTGATCTCATAACACATCTCTGTTGATGTGTAAAGCCATATTCAAGTGATGGCTGATCACATTCATAATTAATGGTAACCAAACGTGGAATGTGGCGGCTGAAAACACTTTGCATATCGATCTGCTTCTCACAACTACAGTTGACCATTTTTACAGTTGACATTTTTACATTGTTTTACATCTCTGGTATCTTGATTGAAGTACTGTTGTTTCTTCCTAAATCTGTTTCCCTACTTTCCTGCTTGTGTCTTAG
Seq C2 exon
AAGATGCAGACAATGGAGGAGATAGCCAGGAAGAAAGTGGACTGGATGACCAGGAGGACCCCCCATTTGTGCCTCCCCCTGGGTACATAATGTATACTGTGCTTCCTGATGGTTCTCCTGTGCCCCAGGGAGTGGCCCTGTATGCGCCATCGCCTCCCTTGCCCCACAGCAGTCATCCTCTGACCCCTGGCACTGTGGTTTATGGCCCACCTCCTGCTGGGGCCCCCATCATATATGGACCTCCTCCTGCCAACTTTGCTGTTCCCCTCATCTCCATGGGTGTGCAGCATTGCAACATCCCAGAGCACCGTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=NA C2=0.802
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCCATCAGAAGCACACC
R:
GGTGCTCTGGGATGTTGCAAT
Band lengths:
353-1754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]