DreINT0007432 @ danRer10
Intron Retention
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44175325-44176428:+
Coord C1 exon
chr23:44175325-44175435
Coord A exon
chr23:44175436-44176316
Coord C2 exon
chr23:44176317-44176428
Length
881 bp
Sequences
Splice sites
5' ss Seq
TGGGTTTAG
5' ss Score
-8.37
3' ss Seq
TAGTTCTCCTCTCTCCACAGATG
3' ss Score
10.83
Exon sequences
Seq C1 exon
TGTCCCTGTCTGATGAGGGCTCGCTGCTGGTGTATAAGGCCGGCTTGGAGTATCATGTGTGTGCGGATGGATGGAGCCCAAACCACAGCAGCGTCACATGCACACAGATGG
Seq A exon
GTTTAGGGTAAGGTCAGTACACACACACACGCACACCAGACACACAGTTCACATGTGCTGCGTCATCAGCATATTTATAACCTCTGAACGCTTAAGCAGATTGCAGCCAATAACTGACAGCCATCTAGTCATTCAGCGTAGTGATATGGAACAGTGATGTGGGCAAAACCTGCTGGAACTACTTTCTGTTTACTTTTTTTAAATCAAGAGAACAAAACATGAGGGCATCACAGTGGCGCAGTGGGTAGCACGATCGCCTCACAGCAAGAAGGTTGCTGGTTCAAGCCTCAGCTGGGTCAGTTGACATTTCAGTGTGGAGTTTGCATGTTCTCCCTGTGTTCGCGTGGGTTTTTTCCGGTTTCCACCAGTGCAAAGCTGGAGGTGATTTGGGTGAGCCAAATTGTCCGTAGTGCATGTGTGTGAATGAGTGTGTATGGATGTTTCCCAGTGATGGGTTGCAGCTGGAAAGGCATCCGCTGCGTGAAACATGTGCTGGATAAGTTGGTGGTTCATTCCGCTGTGGCAAACCCAGATCAATAAGGGGACCTAGCTGAAAAGAATATCAATGAATGAGAACAAAACATGCAGCATAATTAAATACTGTAATAAATGCATTATATATTGTTTGTCCATGCTACATTAGTGTAAACACAGAACACATGATCAGCAATAGAACAGAAATGGAAATAACAGGAGGGCATCATAACACACTCCTGTCCAGCTGATGGCGCTCATACACTCAAAAGAACTCTCTCCTGCACAAGCTATTTTCCAGTCAGTTGTTCAAACGTCTGGCATATGTGTGTGTTTCTCTTTCTCTCTCTTTCTCTCTCTATGTGTGTGTGTGTGTGTGTGTATGTGTAGTTCTCCTCTCTCCACAG
Seq C2 exon
ATGCAATGTTGGATGTATCTCCTGTTGTGAGACGCAAACGCTGGTTACATGTGGACCCAGACTGGAGTCCTGAGAACATGCTTCCTCTACAGGGCCTGCTGGAAAAACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281:ENSDART00000167813:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGTCTGATGAGGGCTC
R:
CCTCGTTTTTCCAGCAGGCC
Band lengths:
222-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]