DreINT0008272 @ danRer10
Intron Retention
Gene
ENSDARG00000101017 | CT583642.2
Description
NA
Coordinates
chr3:32846182-32846714:-
Coord C1 exon
chr3:32846625-32846714
Coord A exon
chr3:32846500-32846624
Coord C2 exon
chr3:32846182-32846499
Length
125 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
TATCATTCTTTTATTTTTAGCAA
3' ss Score
8.03
Exon sequences
Seq C1 exon
TGCACTTGCCGCAGCCCAGTATTTCTCCCAGTGCCCCTGATGGAGGTTTTTTTTTTATTTCAACAGCCAGTGCTCTAACTTCTGTAACTG
Seq A exon
GTCAGTAAAAGACTGTCTTTTCATCAAAGAAGTTTGATTCTAATTACATGACATGACAACTAACTTTAGCATGTCTACAAGTTTAGCATGTGAAAATATGTGTTTTATCATTCTTTTATTTTTAG
Seq C2 exon
CAAGATTTTCTCTCAGACTGGTGAATGGTAATAATGACTGCTCTGGGAGAGTGGAGATCCTGTATAACAGTGTGTGGGGAACCGTGTGTGGTGATTACTGGGACATGAATGATGCTGCTGTGGTGTGCAGACAGATGGGATGTGGAGGAGCTGTCAGTGCACCACAGAGTGCTTCTTTTGGCCAGGGAAGTGGTCAGATCTGGATGGATGATGTTGGATGTTCAGGAAGTGAATCCTCACTCACAGACTGCTCACACCGTGGTTTTGGAGAACATGACTGTGGACACCATGAAGATGCAGGAGTTGTCTGCACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101017:ENSDART00000157591:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGTATTTCTCCCAGTGC
R:
CACTCTGTGGTGCACTGACAG
Band lengths:
248-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]