MmuINT0050132 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138199661-138201840:+
Coord C1 exon
chr7:138199661-138199693
Coord A exon
chr7:138199694-138201516
Coord C2 exon
chr7:138201517-138201840
Length
1823 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAACCACCATGTCTTTCCAGGAA
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATGTGTTCTACCCAACTGAACAAACCACTGCAG
Seq A exon
GTAAGTTGTGCTATGTTGTATCCCTGTGGCCTATTGTCCCCAGAATCCCCAGGCTCATCTCCTATCAGAAAATGGGCAGAAGGAAGAGCATGTGGAGTCCTCAGCTCCCAGGGAAATTTCCCAGTAAGGTCAGGCCTATAGCGGCGTATATGCCATGGATTATGGCCCTGAGTTGTGCAGGTTGGGGAGGATCAGTAGAGGAGGCACCTTCAAGGGTCACCAAGGACTTCTTTTTTATAGGGATTCCATTGACCATTCTCAGTTTCCTGAGGTCCCCATGTTTCACCCACACCTTGGCCAGTCCAGAGAGCAAGCCTTGGGCTTCAGTTTCTGGAGAGGATATCAAAACTCTGCTTAGCCAATGTCTTGTCATTTCCCTTTTTCTGTGGCCTCATAAAGCTATTGTGGATGCCTGAATCCCCAACCTGGGACATGAAAGATTCTGTTTTATCTCTCTGAGTTCCTCTAATGAGGGTTGTTTGTGGCACACCAGTGTAGTTTAGACTCTGATGGCCTGGGGTTTGGGAAAGAAAATCTTTCTTTTTTCCTTGAAATTTTTATCCTAGAACACAGCAAGGACTGTTTCCATAGTGGTGCCTCTGGTCAGCACAGAGTTTGCAGGGAATCCAATTGTTCCAGTGTCAGGCATCACTTTCCCTTATGCATGTGAGGAGTCCCAAGGTTGAGGCTGGCTTTACTCTCACTAAAGCCATATTCCATCCCAAGATTCCACCCAGATTATATCAGGAGCTGCTGTGTGGGGAGAGGTCAATTCTTTCTGTATCCTGAGACCTTTGAAGGTTATGCAGAGGCTGGTTGCTTGGTGCCAGTGGGTTAATGTCTTGATATCATCACTCCAATTCCCAGCACCAAGTCTACTCTTGAAGGCACTGTGTCTGAGAGCCAGGGCTCTTTTAAAGTAATTTAAACATATGTTTTAGGTTTGTGTGTCATTTAAAAAGGACAGATTAGAGTAATTTCAAAACAGTAAAAAAAAACAATGAGCAGGTCCACACACACATATACACAACCACACACACATACATAACACACACAACTGCACATAGATAACACATACACACACAGCTGTGAGTGTAGGAAGACATACAATATTCTACCACTCATGATGCTGAGCTAGTAGGTTGTTGAGTTTCAGTCTAGCCTAGGGTACATGAGGCAGTCATGTGATCCAGGACAGTAGGGGACAGTCAGCTCATTCAGGTTTATAATTTTGTATTAGGCCTGAAAGCAATTCTAATGTAAACTGTCAACCATGTGTATGTAAGCAGCTGTTGAGAGCCTTTGCCATGCACTCTTTTGACGGTAGGATCATCTTTAAGCCCCTTTGGTCTATTTTAGACCAACCAGCTCTGCCTTCTCATTTACTGCTGACAGGTATGGATCAAGGTAGAGAGTAATGTGTGCAGGTCCAGTGTGTGAGGAGTTGGGAGGAGTTTGCAACCACTCTCTCCTTGAAATAGTCTTGATTCTACAGTACACGGCCCTCCAAGCCATTGGTACAAGGTAGAGTAAGTTTCTTGTCACCATTCAAGGCAGATTCAAACTATGCCAACACAGTTTGCAGAAACCTATTCACCCAGGTGACCAACTTGGTCCTCATGTCTAGGACAGAAGTAGAGAGCATTGTAGTGAGGGTTCACAGGCAAAGTGAGAGGGTACAGATCTTTACAGGACAGTGTGGCCAGGATGCAGCAGCAGGAGCTGTTCATGTCCCATATTGCTTTAAAGTTCATAAGTGAGCAGCCTACAAAGTGTACAAGTGAGACATGACCAACAATGGAGAAACCACCATGTCTTTCCAG
Seq C2 exon
GAACAGATTCTGGTTTGGCTGTGAGGCTGGTGAACGGAGGAGACAGGTGTCAGGGTCGAGTGGAGATCCTTTACCAGGGTTCCTGGGGCACTGTATGTGACGACAGCTGGGACACCAATGATGCCAACGTGGTGTGCAGGCAGCTGGGCTGTGGCTGGGCCGTGTCTGCCCCAGGAAATGCCTACTTTGGACCGGGCTCTGGATCTATTGTTCTGGATGACGTGGCCTGTACAGGACACGAGGACTATCTGTGGAGATGTTCCCACCGAGGCTGGCTCTCTCATAACTGTGGACACCATGAGGATGCTGGAGTCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTGAACAAACCACTGC
R:
ACAGATGACTCCAGCATCCTCA
Band lengths:
343-2166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: