HsaINT0048806 @ hg19
Intron Retention
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:2926]
Coordinates
chr10:124350995-124352111:+
Coord C1 exon
chr10:124350995-124351033
Coord A exon
chr10:124351034-124351787
Coord C2 exon
chr10:124351788-124352111
Length
754 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
GTTCTTGTGTTCCCCTGTAGGAT
3' ss Score
11.37
Exon sequences
Seq C1 exon
ACACGTTGTCGACCATCACGTTACCTCCATCGACAGTAG
Seq A exon
GTAAATAATCCTCTCACCCCTCCCTAGGGCTCACTCTCTACCTCTGGACAAATGTTTTCTCTGAAAATGATAGGATGAGGGTCAAGGTGGGCCCCTGTCTTTTTCACATCCCTGTGCGCTGAGTGGGAGGAAGTTGAGTCTCTGGGGAACCAGTCCCGGGTCGGGTGTTAGAGGGTGGAGGGTGTTGGTGACCTATCTCCTGTTGGACCGTGTTCCAAGTATCAGTAAAGATCCTCATTCAGGTGCTGGACAAACCCTGGAGAGCTCCCTACTCCTGGGACCTCATTCCTGGCCTTCTGGCCATGCATTGCAGACCTGCAAGGGAGGGTGAAAATTTCTGTCCCTGCAGTTGTCTGGCCAATGTGTTGCCATCCCTGGCAATTTGCCAGAAGCCAGAGAGGACCACGTGGGTGCCACCAAACTCTTCGACATGGGGATAGCATAGGCCTGCCCTCTGGAGCAGTGGAGCTCCATCCTGTGTGTGCTCAGAGTAGGGAGTGGGGTGTCCATTCCTGTCACCTCCACTGGGGTCACAGGCGCTTTCCCAAAATCTGAGCCTCCATAAACCCAGGCAGAATAGGGTATCACCTCTCCTTCCAGTATGATGAAGCTGAACCTCTGGTTGCAGTCGTATTCAATCGTGACTGCTTGTCCAGGCGACCTTGGCCATTAGGAAGTACCCTGAGTGTGGAACGTGCCTTAGATCCTTACCTCATGGTAGGGATGGATAAAGGGTTCTTGTGTTCCCCTGTAG
Seq C2 exon
GATCTGAATCCAGTTTGACCCTGAGGCTGGTGAATGGAAGTGACAGGTGTCAGGGCCGAGTAGAGGTCCTATACCGAGGCTCCTGGGGCACCGTGTGTGATGACAGCTGGGATACCAATGATGCCAATGTGGTCTGCAGGCAGCTGGGCTGTGGCTGGGCCACGTCGGCCCCAGGAAATGCCCGGTTTGGCCAGGGCTCAGGACCCATTGTTCTGGATGATGTGCGCTGCTCAGGACACGAGTCCTACCTGTGGAGCTGCCCCCACAATGGCTGGCTCTCCCACAACTGTGGCCATCATGAAGATGCTGGTGTCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-DMBT1:NM_017579:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCATCACGTTACCTCCA
R:
CTGAGCAGATGACACCAGCAT
Band lengths:
355-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)