GgaINT1001352 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:620659-622543:-
Coord C1 exon
chrLGE64:622229-622543
Coord A exon
chrLGE64:620989-622228
Coord C2 exon
chrLGE64:620659-620988
Length
1240 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGTTGTTTCTCTGCTTGCAGGCT
3' ss Score
8.44
Exon sequences
Seq C1 exon
AGGGTGACCAGGTCCGGCTGGTGAATTACAGGAGCCGCTGTGCTGGCAGGGTCGAGATCTTACACAACAAGCGTTGGGGAACTGTGTGTGACAAGAACTGGGATTTGCTGGATGCCAATGTAGTGTGCAGGCAGCTGGGCTGTGGGAGAGCACTGTCAGCCACTGGACAGGCTCAGTTTGGCCAAGGGTCAGGAATTGTGTGGCTGGATGGGATGAATTGCACAGGGTTTGAGCACTCACTGTCTTCCTGCTTGGCCAAACCATGGGGAATTACTACTTGTGACCACTGGGCAGATGCTGGCGTGGTGTGCTCAG
Seq A exon
GTGAGTGCTGATCCTCCTGCATTTCACTTCTGAAGCAAGTCAGAGGGCTTGGTGGAAGGTGCAGGGACAGCTGGTCCATGCCTCATGCAAAGCTGAGCTGGGACCTGGCTTCAGCATCAGTAGTCAGTGTGGTCTCCCTAAACTTGTCCTGTAGCTGGTGAATGAAGAGGGTCCCTTCCTTCTATGCCAAAAATGTTTGTTTTGGAAGATGGGAGGAATTCCAGCAGGCAGCCTTCCCCATGAACCCTTGAGGCTGACCATGTCCTACAACAGGAAGAATAACACTGAGAGGGAAAGTCTAGTGCAAATAACCTTCCCAGTGAGCTTTTCATGGTGGGAGTGGGGCTGACAACTTGCACAGTGCAAGCTGTGGGAGCACTATTGCGTTGCAGAGAGAAGCCCTCGTGTTCTCCCCTCCTCCTCACCTTTTAGTGACTGGAAGAGGGACCAGAAACTTAAGTGCAAGCAGATAAGCATGGAACAATTATATAGAAGGGATTTCTGGAAGGAAATTTCCAGCATTTATAACACTCATAAATTTTTGCAGACTCGATCATCCCAGAGCCTGCTCATCTCCGACTGGTGAACGGCTCACACCGCTGTGCTGGCCGAGTTGAGGTGTTTCACAAGGAGATGTGGGGAGCTGTGTGCGACCATGGCTGGGATAAAATGGATGCGGAGGTTGTGTGCCGGCAGCTGGGCTGTGGGACAGCACTGTCGGCCTCAGGTGAAGCACACTTGGATGCTGCATCTCTTCGTGTGTGGTTGGACAATGTGAGCTGCGAGGGAACAGAACTCTCTCTTACAAAATGCAGAGCGAGCCCATGGGGAAAGAGCAGCTGCAGCCATGGAAAGCATGCTAGTGTTGTGTGCTCAGGTGGGTTTCAGTGCATTAAACTGGGTTGGGATACACTAGCTGCTCTGATATGGTCAGGTCCTCTTCCACCATCCCACTGGATGGAAGATGGCTACTGTTGGAAGTAGATAATCTTCAAGGTCCCTTTCAATTCAAGCCATTCTCTGATTCTCTGATTCTGTGATTCTATGATTTATCCAACTTTCTGCCAGAGCGAATATTCTCAGATCCTTCAGCGAGTGTCTCCAGAGAGCTGTGGATTCAGAGGCAATGTAACCACAACGCTCTGTGCAGTACTGCCAATGAAAACGAACATTCCTCATCTTTCTCCACAGAAACTGAATGGATGTGCAGTGTTTGACTGAGTTGTTTCTCTGCTTGCAG
Seq C2 exon
GCTCGGTTGTTTCCAGTTTTGCCCCAATTCGACTGGTGGACGGCCCAGGTCTCTGTGCTGGGAGACTGGAAGTGTTTCACAATGAGCAATGGGGAACGGTGTGTGATGACAGCTGGGAGTTCACAGATGCTGCAGTGGTGTGCCGACAGCTGGACTGTGGGGTGGTGATATCAGCTCCACCGAGGGCTTACTTTGGGCAAGGACAGGGACCCATGTGGCTGGATGATGTCAACTGCACGGGGACAGAAGCTGCCCTCTCTGAATGCAAGTTCAAGGGATGGGGTATCCACAACTGTTATCATCATGAAGTTGCCAGTGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=88.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGATGGGATGAATTGCA
R:
GCAGTTGACATCATCCAGCCA
Band lengths:
350-1590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]