DreINT0009055 @ danRer10
Intron Retention
Gene
ENSDARG00000074914 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr10:365814-371969:-
Coord C1 exon
chr10:371747-371969
Coord A exon
chr10:365909-371746
Coord C2 exon
chr10:365814-365908
Length
5838 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
3' ss Seq
TGTGTGTGTGTGTGCTGTTGCAG
3' ss Score
-0.61
Exon sequences
Seq C1 exon
CACACAGTCTGATGGAGCAGGGCTGTGTGTGAGCTCGTCATGTCCAGGGGCCCTGGGCCCTCAGGGGCAGCCCATCTACAGGATCGGGAGCCCGGCGCTGGGGGTCTGGCCGAGGGTCCGGTGGGCCTGCAGACGCTGCTGGATCTGCTGGTGGGAGTTTATCAGGAGTTCTGCTCATCGCCGCTGCGCAGAGAGAAACACGTGCAGAGATTCCTGCAGTGGG
Seq A exon
GTCAGTGCTCAGATACACTCTTTACTGTGCTGACTGGGGTCACAGGGGTCAAGTTCACACTACACTGTAAATAATATCGGTTAATTAGATATTGAAGTTTGAAGACTAACTTTATGATGGGGGCTTGAGAAAAGCTGCCGGGAGTAGTTTGTTTAGTTTGAAAAATAAGAAAATGAAGTATGGATAGATTGAAAGAGCATGGATAGATTGAAACAGTGAAAAGTATGGATAGATGTAAACATTTGAAATATGTGGATAGATTGAAAAAGTAGGGAGAGATGAAAAGTATGATAAATTGAAAAAATATGGATAAATTGAAACAGTTCGATAAAGAGTGGATAAATTGAAAAGTTTGATTAAGTATGGATAAATTGAAAAAGTGATGAAGGATATGATGAAGGTTTGATAGCTAGCTGGATGGATGGATAGATGGCCATGTGGGTGGCTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATAGATAGATAGATAGATAGATAGATGGATAGATAGATAGATAGATTTGCTGTGGATGAAATGATGAGACAGAAAGAGGGAACAGCAGGAAGTGAGCGACAGGATACTGAACTTTCCATCTGTGGCACAGGGTGGAACACAGGAAGTGATGTCACATGTCAGAGCTCAGCAGTCTTTATGCACACACAGAGAACAAACACTAGAGCAGAATAACCCAATAATCACATCATGGAAATGAAAACACATTTGAACAGGATGATCAGAGGACAGAGATCTTGCAAATCATGCAGCTCCATACTGTGTGTGTAAACCACGGGCACACACACACACACACACACACACACACACACAGTGAGCGAGAGCAAAGACGCAGTTTCTATATCCTCCATTACTGAAAGACATTGCCGTGTTTTGACAATATGGATTTGTTCCTCGCTAACAGCATATCATTTTAAAAGGCCACATCAGGTTTATTTTCAGGAAATATTCCACTGGCACCACTATATCTTCATCTCTGACTCTGTCCGGGTCTGTTGGGAGTCGTCCACATTTCTCTGTGACTCAAATGTCCTGTAAACTGGAAAGTATGCTGTTGTTTTAGTAAGAGGCGTTCATGACACTGTCCATGATGTTACTGCTGTCTGAGCTGCATCTTCCTCATCTCTGACGCTGTTCTCGCTGTATTCCCTAACCATGTTTGTGTTTATGAGGATGATGAAGATGAAGCCTTTATTTGTCATCTTTTACTCCCCGATCATACACAAACATTTCAGGGGAAGACAGCAAGAGGTAGAAAGAGGAAATAAGATACATGAGGGAAAGGGCAGGTGAAAGAGCCCCTTTCAGACCCTGCTTAAAGTAGGGCAGTGTGAGATCAGGGGTGGGAAAGCCCCAGCACAAGCACACAAACACATAGACACAACATCGCAACAGGGGATGAGGATATAGTCCGATGAAGGCAGCAGACATCTAGTCCTGCAGCCAGGGGGCGCTGGTCACAGACCCTGGGTGGAAGCACACAAAGGTGAGGGGTTTGGGGGAGGCAATATTAGTCTATCTGTACGTGTGTGTGTGTGTGTGTGTGTAAGCCTGTAGAGCAGGGGTCACCAAACTCATTCCTGGAGGTCCGGTGCCCTGCAGAGTTTAGCTGCAACTTGCCTCAACACACCTGCCTGGGTGTGTGACCTTGATCAGCGTGTTCAGGTGTGTTTGATTAGGGTTGGAGCTAAAATCTGCAAGACAATTGAGTCTCAATAAGTGTGTCGTTATCATGTTCTCCAGGGGAAGCTTCTAAGCTAAAATATCCCAAACAGAAAAGGTTTTCAAATTTGGGTCAATATCTGCCAATTTGGATATCTATCAGGTTTCTAAAGGGGATGTCAAGGCGTTCCAAGGCCAGCCGAGAGACTAAGGGTGCTTTCACACCTGCCTTATTTAGTTTAATTGAATCGCACTAGAGTTCGTTTCCCCTTTTGGTATCGTTGGTTTGGGCCTGCCGTAGGCCGATGCGCTGTGCATTATGGGATATGGAGGAAGAATAATTGTTGACAGTGCTTTACCAACAGAGAGAGAGAGAGAGAGAGGGGAAAGCATTAGCTGATGGATCGTTGGTAATATTTCCGCAAGATGAGCATGTCGCAGTTTAGCTAAATTAATTCACGGCTCCCCCGGAAGTGATGAGCGATGCATTAAACACTGTTTTCCAGCCGCGGCCGCGCTTCATTTTCGTAATGTATAGTTTGTCTAAAGCAGGGATACAATCAGCCAGCGCAGTCCTCCCTCCAGAGTTAAAGGTTTTGTTTACCTGCGGGAGTTCACTGGCATTTTCCCGCATGTGAATTCTGACCAATCAATAAGCAGTTTAGGAAATATGTTCAACAACATCTGGCAAATGAGAGATATGGATTTTGTCAGATGACTGCATTTTGGTTCGTTTCAACTTGGTCAGACCAAATCCAGCAGTGTGGTGTGAAAACGACCCAAAGACGGCAGAAAATGCAACAATGTATCAATTATTGCGCTTGATCCGAACCAAATGAAGCCAACTACAGATGTGAAAGCATCCTTAGTCCCTTCAGCATGTCTTGGATCTTCCCTGAGGCCTCCTGGTGGGACATACTTGGAACACCTACCTACAGTAGGTAGGCATCCAGGAGGCATCTGAAACAGTCGCTCGAGCCACCTCAGCTGATTTCTCTCCATGTGAAGGCACAGCGGCTCTACTGCGAGCTCCTCCCGGGTGTCAGAGCTCCTCACCCTATCTGTAAGTGTGCGCCCTGCCACCCTGTGCCTCATTTCGGCCGCTTGTATCCAAGATCTTGTTCTCCCAGTCTTGACCCAAAGCTCATGACCATAGGTGAGAGGAGGAGCGTAGATTGAATGGTGAATTAGTTTACAGAAAAGCAAATGAGTAACTTCCCCTACACACGGCTGAACAGTTGTCTGCAGCTCCTGCTGTCATGATGAACCTCCAGAGAAGCTTCAGTTTAGCTCACTGAGTTCATGCACAATTCCTGTTTTTCTCCTTTAGGATCGGGCTTTGGCTCAGCTTTTGAAAGTTTAATACACAGTGTTTTATACAGTAAGGTTTTATTTTAGATTATTAGGTTTATTTTGCATCTTAGAAGCTCTTCAGTTCTGCAGCTGATTGTGACAAAACACTTCTGCCTGATTAAAATGAACAGAATTAGCAAGCACTGGGGATTTGTTATTGTTCCTGCTGTACTGTACTCATACCGTGAGTGTACCGTTATAATGTTGACTTTTCTTGGGCACTTTTATAAGGGCTGCTTTTTACTCTGAGTGATATTTATGCAGATGCCTTTACTCTACCTGCACTATATCTTTGGGTGAGCAGTAGTACTTTTCCTGCTGAAGGATCTGTCAGTACTCTTTCCTAATGTGGACTGAATGTGTCCGTCAGCGAGGCCGGTTTGCTGTATGTGTGAGCTGGTGTGAGTGCGTCTGTGTTGGCTGTATTTGCTGGCGGTGTTCCTCATGTTTACAGTACAGCTCGTCTCTCTGACTGAGGCTCTGCAGCTCTGCTCCTCTGCGCTGGAAATGTGGAAAGTTCTGCGCAGTAAAACAGTTTACACTGTTGCCTTGGTCTCACACACATTCCAAGAATCCAAGGCTGGAAAACTTGCCTTAAAAAAGCCTCAAACACGAGCGTGCTATTCTTAGACTCATCTGCTCTATTTCTGACCCTCATTCTTAAAGGGGAAGCAGCCACTGGTCTCCTGTGTACTGGTGGACACATGAGTTCAGACTGACCACTGACCCACACAAAGTGCTCATAGATCAAACAGAAGGCTCATATATTCAGATTGCTCAGAGAAGAAGAGTAGGCAAGAGCACCAGGATGAGCTTCTGGATCTGGTCTGATGGACACTTTACTGCCCCATGAGGCCACAGGAGAAGGATTATGATTGACCTAATATACAAATACACTTCATTGAACAGATATGAATATGTGATATGTGAAGTGTAGATACACATATATTTAACCTATTATACTATATAACTGCAGGTTAATTATACTGTAAAAAAAAAAAATCTGTAATTTTACAGTTTATTTCTGGCAGCTGGGGTGCCAAAAAAAACTTAAAATAACGGATATTAAATTACAGAAATATACTGTAAATAACAGATATTAAATTACAGAAATATACCATAAATAACAGATATTAAATTACAGAAATATACTGTAAATCACAGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAATATACCATAAATGACGGATATTAAATTACAGAAACATACCATAAATAACAGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAACATACCATAAATAACAGATATTAAATTACAGAAATATACCATAAATAACAGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAATATACCATAAATAACGGATATTAAATTACAGAAATATACCGTAAATAACATATCAAATTACATAAATATACCGTAAATAACAAATATTAAATTACAGAAATATACCTTAAATAACAGATATTAAATTACAAAAATATACTGTAAGTAATGAAAATTAAATTACAGAAATGTACTGTAAAATAACAGATATTAAATTACAGAAATTTACTGTAAAATAATGGAAATTAAATTACAGAAATATACCGTAAAATGGCGAATATTAAATTTTAAGGACAATTCTGTAATTTAACGTCCGATATTTTACGTTGTTTTTCCGGCACCCCAGTTGATAAAAAAAACTGTTTTTTTTTTTTTACAGTGTATGTTTATATACAATAACTTTAACTGTTAAAAGCTTTTAGATATTATTTAATTAGTTAAGGTTATGGGCTCTATTTTAGCAATCTAGGTGCAGAGTCTTAAGCACATGGTGGATTAAGGGCGTGGCCGAATCCACTTTTGCTATTTTTAGGACAGAAAAATGCGGTTAGCACCGCGGAGCATGGTCTAACAGTGTTGTGCTTATTCTCTTAATGAGTTATGGGTGTGCTTTGACAATAAACTATTTAAACAACGTGGAGCAAAATGGGACAATTAGGGTTGTGCTGGTCTGAAAATAGCAACACATTGCGGCAGACACGTCTCGCAGCTTATTGCGCTGGGTGTATAATATGCCCCAATGAATAATAACTAATAAAGTTACAGTAACTAATAACCGTAACTTTTCTGAATTTGAAAGCTGCTTTAAAACAACAACTATTGTGAAAAGCACTATACAAATAAACTTGAATTAAATTGGATTGCATTGATTGACAGTGAGTTTAAAATCAAGATACATAAATCAAACTAATAGGTCACTTGATAAAGACAACATGGCAGATGTTGGAGATATGTGCCCAGGGCTACATTTCTGAAAACTCAGAAATATGTACCCTGGGCTATATCTTCTTGCAGTTTTGGTTTTTACAAATGCACTAGAGGGCGCTGTGTACATTTTAGACAATCTCAAATACATTACTGGGGCTAGTTTTTTCATAAGTGCCATTTCGCGTAAATCCACTAGGGGGCGGATTGTTCAATAAGTGTAACTCAGGGTCTGTTATTTTTGTGTGGTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTTG
Seq C2 exon
CAGCGGAGCCTCTGGTCAGACAGGTGAAGAAGACCCGAATCAGCAGAGAGGATTTCCACATCCTGAAGGTGATCGGCAGAGGGACGTTCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074914:ENSDART00000114487:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.6=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]