DreINT0009122 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27743221-27744361:+
Coord C1 exon
chr5:27743221-27743343
Coord A exon
chr5:27743344-27744229
Coord C2 exon
chr5:27744230-27744361
Length
886 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TGCTTTCATTGTGTTAACAGGAA
3' ss Score
8.51
Exon sequences
Seq C1 exon
GTTGGAGATTTGCAATACGCCTCTCCGGCTACTGTCTCTCGCTGTGGAATGGTGTTTGTGGACCCTAAAAACCTTCGCTATGCTCCCTACTGGGAAAAATGGGTCAACAGCAGAGCCCCCAAA
Seq A exon
GTAAGACCTTTTCTGTGCTTACCTTAACTGAGACCTAAACATTAACAGCAAATTTATAAAGGCTGATTTTTTGTTTGTTGCATTTTGACAGCCTTGAAAAACAAATAAAAAGGTTCAAATTAATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATGATATGATGTGATGTGATGTGATGTGATGTGATATGATATAATGTAATGTAATGTAATGTAATGTAATATCATATGATATAATATAATATAATATAATATAATATAATGTAATATGATATAATATGATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATAAAATATAATAGCCATTTTTAATTGCGTTTCTTTGTTTTTATTCATCTATTTCTTCTATATGTAATTGTTAGGAGAGAAAGGATTATTGTTCTCTTTAATTATCAAGACAATTTTATCATGATATTCATATTCATATGATATTCATATGTTTGAGTAAACTTAAACATAAACTTAAACGCAAAATATGTGATAAATATGATTGTAAATCAGCTTTGATCAGCTTTATTTTACAAATCATCTTACTATACTTATAATTATTATTATTCATCTTTTTACCTTTATTATGATAGGACAGTAAACTTGGTGATATGTGTCAACACAATAACCACTGCTACATTGGCAGAGTACAAAAAAAATCACAGTATGATATACAAGATTATATTTAATCATGCTTTCATTGTGTTAACAG
Seq C2 exon
GAAAAGGCAGATCTGTGTAAACTGTTTGAAAAGTATGTGCCGAGTGCCATTGATATGATAGTGGATGGTGTGGTTGATGGTAAACAGACAGAGAAGCTAAAGACTGTAATCCTGCAGACGGATTTAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGATTTGCAATACGCCTCT
R:
CATGTTTAAATCCGTCTGCAGGA
Band lengths:
254-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]