HsaINT0049248 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123865951-123867601:+
Coord C1 exon
chr12:123865951-123866073
Coord A exon
chr12:123866074-123867466
Coord C2 exon
chr12:123867467-123867601
Length
1393 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
GGAATGCTACTTTTTTATAGGTG
3' ss Score
5.67
Exon sequences
Seq C1 exon
GTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
Seq A exon
GTGAAATTTTTTTCTAAAATGAACTTAAATTTATTAGTATTGATGGCTAGTTGGATAACATAGTCCAGAGGGATGTTTGTAGTTGAAGGCGATGACTTTGTCCTTGACCTGCCCATGTCCCTGAGCACAAAATAAGTGAAAACATGGCAGACACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGACCGGCTAATTTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCTTGAGCTCGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGACACACCGACACACTTATTTAATTTCAGATAGTTTATAGCCAGTGGGATAGGTAATGATTGGATTGGTTGGTCTAGACCAGAGGTTGACAAACTTTTTCTGTAGAGGGGTAGATAGTAAATGTCTGAGGCTTTGTGTGGGCAATATGATTTCTTTCACAGCTACTCAACTCTGCTGTTGTGGCATGAAAACAGCCAGAAATTTGTATACAAATGGGCATGGCTGTGTACCAATAAACCTTTATTTACAAAACAGATGACAGGCCAGAGTGTGTGTTGTCTTAACAAAAGGCTTCTGTGAAAAGTGCAGAGATGGATGTGACAGTCACGTGCGGGTTGTGGCTCAACCACACCTAGGACGCTACGACCACCTTCTCAAAGGAACACAGGTGTTCTGGGTGTGTCTCTAGTAGGGCTACTAGGTTGGAGGTGAATGGAAACCAGGACATAATTATGCCAGAAAAGAGCAGAACAAAGGAAGAACAAAGGAAGCATGACAGAACCATCTGAGGCACTGTCCTGTGGGAGACAGCTGTCTCAGGACCCTTGCAATCCCTGGTGGTGATTGGTGCTTTGATAGGGAGGGGACCTTCACTGCTTTACAGTCTTTTCTGGATGACTGTGGTCACTTGAACTCTAAGATGATCAGCCTCTTTCCTGTCAAATGGGACCTGTTATCTTCCCTTTTTCTTCCCCAAGGGCATGGTAGACTCTGTGGCAGCGAAATGAAACACTTCATGATGAGATGAAAGCATATTGCAGAGGACAAATCTCTCTGCAAATATAGGGCACTATTATCAGGATTTCCTCACCTGCCAAATGTATCATTCATCAGAAGATGTTGCTCAACCCTCTTTGGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAATGCTTTGGAATGCTACTTTTTTATAG
Seq C2 exon
GTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAGTATGTGCCCTATCTCATGGATGTGATAGTGGAAGGAATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGATTTACAGTATGCCTCCC
R:
ATTGAGGTCTGTCTGAGGAAC
Band lengths:
254-1647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development