GgaINT0008948 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4928480-4929117:-
Coord C1 exon
chr15:4928995-4929117
Coord A exon
chr15:4928615-4928994
Coord C2 exon
chr15:4928480-4928614
Length
380 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
TTGTCCCTTTTTTCCCTCAGCAA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTTGGTGACTTACAGTATGCATCTCCTGCCACAGTATCCCGCTGTGGAATGGTCTTTGTGGATCCTAAAAATCTAAAATATAAGCCTTACTGGCAGAAGTGGACACAAGGAAGAGAAAACGAG
Seq A exon
GTGGGAATTTCTGCATTTGGTCATAGAGTATTTTTCATTAAATACTGAACTGTAGAAAGATGTGGAAAAAAAAACAAAACACAAAACATCTTTGTAAAGTCAGTCTCATCTTCTGAATTGGCTTACAGTTCACTTGTCATTAAGATCTGAAGTAAGACAGCTTAGTTACTATCACCTGATGAATGCACATCTTCAGCTGCTGAAAAAACAGTCTGTATAACAGTGTTAAATTTCTTAATTTGCCCATACCCTGTCATTGATAGAAGTGATTCCTGTAAGAGCAATCATACTTGGTCAGCCAGGTGTTGATGGGAAACTCTGCTTTCACAATCACCCTTCCACTTTTCTTGTGTGTAATTATTGTCCCTTTTTTCCCTCAG
Seq C2 exon
CAAGAGAGAATTGAATTGAATCGTTTATTCGAAAAATATGTGCCCTGCCTTATTGATATGATTACAGAGGGAATTGTGGATGGCAAACAAGAAGAAAGGCTGAAGACCATTGTTCCTCAAACAGATTTAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGACTTACAGTATGCATCT
R:
TTTAAATCTGTTTGAGGAACAATGGT
Band lengths:
254-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]