HsaINT0049248 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124350498-124352148:+
Coord C1 exon
chr12:124350498-124350620
Coord A exon
chr12:124350621-124352013
Coord C2 exon
chr12:124352014-124352148
Length
1393 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
GGAATGCTACTTTTTTATAGGTG
3' ss Score
5.67
Exon sequences
Seq C1 exon
GTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
Seq A exon
GTGAAATTTTTTTCTAAAATGAACTTAAATTTATTAGTATTGATGGCTAGTTGGATAACATAGTCCAGAGGGATGTTTGTAGTTGAAGGCGATGACTTTGTCCTTGACCTGCCCATGTCCCTGAGCACAAAATAAGTGAAAACATGGCAGACACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGACCGGCTAATTTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCTTGAGCTCGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGACACACCGACACACTTATTTAATTTCAGATAGTTTATAGCCAGTGGGATAGGTAATGATTGGATTGGTTGGTCTAGACCAGAGGTTGACAAACTTTTTCTGTAGAGGGGTAGATAGTAAATGTCTGAGGCTTTGTGTGGGCAATATGATTTCTTTCACAGCTACTCAACTCTGCTGTTGTGGCATGAAAACAGCCAGAAATTTGTATACAAATGGGCATGGCTGTGTACCAATAAACCTTTATTTACAAAACAGATGACAGGCCAGAGTGTGTGTTGTCTTAACAAAAGGCTTCTGTGAAAAGTGCAGAGATGGATGTGACAGTCACGTGCGGGTTGTGGCTCAACCACACCTAGGACGCTACGACCACCTTCTCAAAGGAACACAGGTGTTCTGGGTGTGTCTCTAGTAGGGCTACTAGGTTGGAGGTGAATGGAAACCAGGACATAATTATGCCAGAAAAGAGCAGAACAAAGGAAGAACAAAGGAAGCATGACAGAACCATCTGAGGCACTGTCCTGTGGGAGACAGCTGTCTCAGGACCCTTGCAATCCCTGGTGGTGATTGGTGCTTTGATAGGGAGGGGACCTTCACTGCTTTACAGTCTTTTCTGGATGACTGTGGTCACTTGAACTCTAAGATGATCAGCCTCTTTCCTGTCAAATGGGACCTGTTATCTTCCCTTTTTCTTCCCCAAGGGCATGGTAGACTCTGTGGCAGCGAAATGAAACACTTCATGATGAGATGAAAGCATATTGCAGAGGACAAATCTCTCTGCAAATATAGGGCACTATTATCAGGATTTCCTCACCTGCCAAATGTATCATTCATCAGAAGATGTTGCTCAACCCTCTTTGGGCAAGAAAAGCTTTCCACTAACTTCCATTTAAATAAACAAACCCTTGAAATGCTTTGGAATGCTACTTTTTTATAG
Seq C2 exon
GTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAGTATGTGCCCTATCTCATGGATGTGATAGTGGAAGGAATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(10.1=34.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGATTTACAGTATGCCTCCC
R:
ATTGAGGTCTGTCTGAGGAAC
Band lengths:
254-1647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)