DreINT0009144 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27761947-27762464:+
Coord C1 exon
chr5:27761947-27762094
Coord A exon
chr5:27762095-27762184
Coord C2 exon
chr5:27762185-27762464
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTAA
5' ss Score
1.88
3' ss Seq
ATCTGTAATCGGTTTTGCAGATC
3' ss Score
8.46
Exon sequences
Seq C1 exon
ATGGGGATCTGAAGGTCTCCCTCCAGATGAGCTCTCAGTGCAGAACGGCATCCTGACTACCAGATCTAGCCGCTTCCCCTTGTGCATTGACCCCCAGCAGCAAGCGCTTAACTGGGTCAAAAAAAAGGAGGAGAAGAACAATCTGAAG
Seq A exon
GTTTAACCTTGTTCCATTTCATCAGTCCGCCAACATTATCCACTCCAGAGTGTTGTAATCAGTCTTGCTCATCTGTAATCGGTTTTGCAG
Seq C2 exon
ATCTCATCATTCAATGATCCAGACTTCTTGAAGGGGTTGGAGTTGGCTATTAAGTATGGATTCCCCTTCCTCTTCCAAGATGTGGATGAATATATCGATCCCGTAATTGACAACGTTCTTGAGAAGAATATAAAAGGGGCAGAGGGGCGCCAGGTTGTCGTACTTGGTGATAAGGAAGTTGACTACGATCCCAACTTCAAACTTTACCTCAATACCAAACTTGCAAACCCAAAGTTCTTACCTGCAGTATTTGGGAAGGCTATGGTTATCAATTACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
NA
C2:
PF127812=AAA_9=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGAGCTCTCAGTGCA
R:
TAGCCAACTCCAACCCCTTCA
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]