MmuINT0050627 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125298359-125299780:+
Coord C1 exon
chr5:125298359-125298506
Coord A exon
chr5:125298507-125299500
Coord C2 exon
chr5:125299501-125299780
Length
994 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCAG
5' ss Score
-0.19
3' ss Seq
CTCCTGCCTCTCACCTGCAGGTT
3' ss Score
12.46
Exon sequences
Seq C1 exon
GTGGGGCTCCCAGGGCCTTCCCCCCGATGAGCTCTCGGTTCAGAATGGCATCCTTACAACCCGGGCCAGTCGCTTCCCACTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAACGAAAAGAGGAGAAGAATAACCTACGG
Seq A exon
GTGCAGTCCCTCTGCCTAAAGTCCCTGCCCCATCCTGAACTCCACCTGAGGACTGAGCAGCCCCTTCCTCTGCTTAGGGGCTCAGGATGAAGACCATACCTTCTGTCTTTATTTCTCTCTGCTTGGTGGTCCAGGATGCTCCACTGTGTGTGTCTGGGTGGGGAGAAGGAGCTAGTGGAGGAGGGAGGCTAAAGTGGCAGCTTTATTTAGAGGTGACCCACTTAGCAAGTCTCACGCTCACTCAAAGCAGACACGTCTGTGGCTTTTAAAGAGTATGTGCAGAATCCTATAACAGTTAACAGAGTCAGTTTAGAATATTCTTATTAACCCCATCCTTATCCCAACCAAGAACAATGATGTTTCCCTTAGTGGTTGCTGCCCAGCCAGTGGCAACTGCTAATACAGTTTCTGTCTCCATGGCTTTGCCTACTCTTGATATCTCCTATGGATAGAAGCATTTAGTAGTTAATCATTTGTGGTTGGCTTTTTTTATGATGTAGGGGTTCAACGATGTCGTAGCAGGTGTAGGTACTTTGTCCCAACCTCTTTATCTTCTTTATAGCTGTATAGTATTCCTTTGTATGGACATACCACATTTTGTTACTCCAACCTCAGTTGATGAACAGGGTTGTTTCCGTTTTATGGTGCTGCTGTGAACATCTGTATACACACTTCTTTTTCATGCATGTTTGTTGTTGGGGGCGGGGGAGGGTCACGAATGTGTAGTCAGAGGGGAACTTTTCAGAGCTGATTTTCTCCATCTACCCTATGAGTTCAGACTTGCATGGCCTTTACCCACTGAGCCACCTCACCAGCCCTGGTCTGTGTCCACATTCATGGTCCTCCAGGGCACGCTCCAGGAGTGGGATGGTTGGGGCGCCAGCTTTTGTTGAGCTACCAAATTAGTGGTCTCCAGTTTTGTCCTATGCTTGCTTTCCTGGCCCTTGCTTCCCACTTGACCTGGCACACCCCACCTCCTGCCTCTCACCTGCAG
Seq C2 exon
GTTGCTTCCTTCAATGACCCCGACTTCCTGAAGCAGCTCGAGATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGACGTGGATGAGTACATCGACCCTGTGATTGACAGCGTCCTGGAGAAGAACATCAAGACCTCCCAAGGCCGCCAGTTCATCATTCTGGGGGACAAGGAGGTTGACTATGACTCGAATTTCCGGCTGTACCTCAATACCAAGCTGGCCAATCCTAGATACTCCCCATCGGTGTTTGGGAAGGCCATGGTCATCAACTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:62
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
NA
C2:
PF127812=AAA_9=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTCGGTTCAGAATGGC
R:
TCTAGGATTGGCCAGCTTGGT
Band lengths:
354-1348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: