GgaINT0008969 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4912811-4913447:-
Coord C1 exon
chr15:4913294-4913447
Coord A exon
chr15:4913091-4913293
Coord C2 exon
chr15:4912811-4913090
Length
203 bp
Sequences
Splice sites
5' ss Seq
AAGATAAAC
5' ss Score
-0.04
3' ss Seq
TTTCTGTTATTCTCTTGCAGGTG
3' ss Score
13.34
Exon sequences
Seq C1 exon
GTGGGTTTCTCAAGGATTGCCTCCAGATGAGCTCTCCGTCCAAAATGGCATTCTGACAACATATGCAAGCCGCTTCCCACTCTGTATTGACCCACAACAACAGGCTTTAAATTGGATTAAGAAGAAAGAAGAAAAAAATAACCTGAGGGTAAAG
Seq A exon
ATAAACAATAATTTAACCTCTTTGGGACTGATGGTTTGTTTGGGATATTGGCCAGCCTCAGTACAAGTGAAATAGTGTAACCAGAAGGCTGTGTTGCTTGTGTTTTTTCTCAGCTCCAGGATGGAATTTCATGTAGGACAATGTCACAGTCAGAAGCATAGTTGGAAGCTCTGTTTTCATATCTTTCTGTTATTCTCTTGCAG
Seq C2 exon
GTGTCTTCCTTTAATGACCCAGATTTCCTTAAACAACTGGAACTTGCCATAAAGTATGGAAGTCCCTTCTTGCTGCATGGTGTTGATGAATACATTGATCCTGTGATAGACAATGTCTTAGAGAAGAATATCAAAGTTGCACAAGGGCGAAAATTCATTGTCCTGGGTGACAAAGAGGTTGACTATGACAGTAACTTTAGATTGTACCTGAACACCAAATTAGCAAACCCAAAGTATTCTCCCGCTGTATTTGGGAAAGCTATGGTTATCAATTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.9=100)
A:
NA
C2:
PF127812=AAA_9=FE(39.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCGTCCAAAATGGCAT
R:
ACCTCTTTGTCACCCAGGACA
Band lengths:
303-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]