DreINT0009158 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27774239-27775021:+
Coord C1 exon
chr5:27774239-27774450
Coord A exon
chr5:27774451-27774853
Coord C2 exon
chr5:27774854-27775021
Length
403 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TGTGTTGTGTTTCTTCAAAGGCT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTGACTCAGGCGGTGGTATCAGTCGAGATGAGTACATCAGCCAGGTGGCGAGGGACATTCAGAGCAAACTGCCTGAAGTGTTTGATCTGGACGTGATCCGCAAGAAGCTGGGACTGGAGATCTCTCCTACATCTGTGGTACTGCTTCAAGAGCTGGAGCGCTTTAACAAACTCACCGTGAGGATGAGCCGCTCTCTGGCTGAGCTACAGCGC
Seq A exon
GTGAGTGGGACATCAATCAGAAATAAAACTCAATTCAACAGACCGGAGTCAGTTATTCGTGTTATACTACGTTTACCATACCTAAAAATGTTTCTCAGATGTTGTATTTTTTAAAATGTGTCAGTTTTTTTGCAGTCAAACCGTTCCTGTGTGTTGGATTTGTTGCTAACATACTGTATATCATGCAAACCATTTTCTAGGCTGTGGAACTGCAACTTGGTCATGACATGCCTGGAACTACTTTAACTCTTATTTATCTAAAAATATATGCACACCTTAGAAAGTTCAACCAATCAGAATCAAACATCTAACAGCCCTGTATAGTAATGGTTCATAAATATGACATTATTATTATTATTATTGTTGGGTTTTGAAGTACGCCATGTGTTGTGTTTCTTCAAAG
Seq C2 exon
GCTCTGGCTGGTGAAGTGGGAATGAGCAGCGAGTTGGATGAGGTGGCCAGAGCTCTTTTTAATGGGCAGATTCCTGTGATCTGGAGGAAACTGGCACCAGACACTCTGAAATCTCTGGGAAACTGGATGATCCACTTCAAGAGACGACATGAACAGTACAGCTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCAGGCGGTGGTATCAG
R:
TGGATCATCCAGTTTCCCAGAGA
Band lengths:
345-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]