MmuINT0050641 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125310697-125311170:+
Coord C1 exon
chr5:125310697-125310908
Coord A exon
chr5:125310909-125311002
Coord C2 exon
chr5:125311003-125311170
Length
94 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
AGTCTCCATCCTGCCCCCAGGCC
3' ss Score
9.28
Exon sequences
Seq C1 exon
GGGAGTCCAGCAGCGGCGTCAGCCGTGACGACTACATTGGCCAGGTTGCCAAAGACATTGAGAACAAGATGCCCAAGATCTTTGACCTGGACCAGGTTCGGAAGCACCTGGGCTTGAGCATCACACCCACCTCGGTGGTACTGCTACAGGAGCTGGGGCGCTTCAACAAGCTTGTCATTCGCATGACCAGGTCTCTGGCTGAGCTCCAGAGG
Seq A exon
GTGAGCATGCGCCCACGGGCTTGGCACTACATCACGGAGAAGGGGGGTCCTAGCCCTCCACAGGCCTGCTGAGTAGTCTCCATCCTGCCCCCAG
Seq C2 exon
GCCTTGGCTGGGGAAGTCGGAATGAGCAATGAGTTAGATGATGTAGCCAGGTCTCTCTTCCTTGGGCACATCCCTCACATCTGGAGGAAGCTTGCCCCCGACACCCTGAAGACCCTTGGAAACTGGATGGTCTACTTCCTGAGGCGGTTCAGCCAGTACACACTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:75
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGGTACTGCTACAGGAG
R:
GCTTCCTCCAGATGTGAGGGA
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: