GgaINT1011477 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4857632-4858129:-
Coord C1 exon
chr15:4857903-4858129
Coord A exon
chr15:4857800-4857902
Coord C2 exon
chr15:4857632-4857799
Length
103 bp
Sequences
Splice sites
5' ss Seq
CGTGTACGT
5' ss Score
5.55
3' ss Seq
CACTGTCACTGTCATTCCAGGCC
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTATTTTTGTTTCAGGTGAATCTGGTACAGGAGTTAGTCGAGATGAATATATTGCTCACGTTGCTAAGGATATAGAAAACAAAATACCAGAAGTATTTGATCTTAACAAGATACGGAAAGGTTTTGGACTGGACCTATCCCCTACAACTGTGGTGCTGTTGCAGGAATTGGAACGTTTTAATAAACTCATCATTTGCATGGCAAAGTCATTGGCTGAACTGCAGCGT
Seq A exon
GTACGTAAGAGCAGTGCTACCGCTGCTCACAGCAAGCAGATGCAATCAACTGGGGCTTTAATTGCCTCAGCTCTGGCACTCAGCACTGTCACTGTCATTCCAG
Seq C2 exon
GCCTTGGCTGGGGAAGTTGGAATGAGCAGTGAGCTGGACGATGTGGCTCGGGCGCTCTTTAACGGACAGATTCCTGGCATCTGGAGGCGGCTGGCCCCCGACACGCTAAAAACACTCGGAAATTGGATTATTTTCTTCAGAGATAGGTATAACCAGTACAACACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTCACGTTGCTAAGGAT
R:
ATCTGTCCGTTAAAGAGCGCC
Band lengths:
248-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]