DreINT0009317 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39601344-39604233:+
Coord C1 exon
chr24:39601344-39601526
Coord A exon
chr24:39601527-39604034
Coord C2 exon
chr24:39604035-39604233
Length
2508 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
ATGAGTTTATTGTTGGATAGGAT
3' ss Score
4.06
Exon sequences
Seq C1 exon
GTAGCAGTCATGCAGCAGGAGCTCACAGCTCTACAGCCAGAACTTATCGAGACCGCGAAACAGACTGATCAGATGATGGTGAAGATAGAAAAAGAGACAGTGGAGGTGGATGCTAAGAAAGAGCTTGTCAGTGCCGATGAGAAAGTGGCCAATGAAGCAGCAGCTGCTGCTAAAGCGATCAAG
Seq A exon
GTAATCAGGTGGAACTGCTTTGACACTTGCATTTGCAAACTTATTTAGAGTATTTTATTGGCCCAAAACTTTAGCAAAATGGTGAACAATTGATGATAATACCCACAATCAATTATTAATACTAAATAATTGTCTTTTGTTGCTGCTTTTCCCTTTAATCAAGTGTAAATGTGACTTTGGAAGACAAAAACAAAAAGGTTTTTATTTATACATCAACTGAAAACTTAATTTTTTGCATTGATGTCTGGTTTATTAGAAATGAACATTTATGGCTGAGATACAACTATTTAAATGAGCAATCTGAGGGTGCCAGGAAAATCTAAATTCGAAGAAAATCATCTTTAAAGTTGTCTGAATGAAGTGCTGTGCCATGCTCATTCATTTATTTTCTTGTCATCTTAGTCCCTTTATTAATCCGGGGTCACCACAGCGGAATGAACCACCATCTTATCCAGCATATTTTTGCGCAGCGGAAGCCCTGCCAGCCGCAACCCAACACTGGGAAAGCCATGCTCATTACTAATGGAAAAATAAGTCAGGGCATAGATAATTAGACAATTATCTAATTGTCTGAGATAATTAGTCTATTGAAAATGTGTATTTTCCATACAAGCTGATCAATCGGTTTCTTGTCATGTGATTCGCGGTGCGCTCGCTGCATTTATTCAACTGAGTGTATCTGAAATGATACGACCGCGTCATGTTGCTTGCGCGTGCAACTCGCGCTCCTCCATTAAAAATAACGAACTTGTGGGAACTCTTGAAAAGATGCAATAAACGAACAGCCCCCAAAAGGCTGCCGCCAGGGATGGGCGATACCACAGTTTTTTATTTTTAATACGATACGGATACTTTTGTTACAATTTTTACGATATCGATACGGCTTGTTATTTAAAATATTAATGTAATTTTTTCAAAATAATGTTAATTGAAAATTTACGCTTTTTCAGCAGATGAGCACCACAACACGCTTCGTTATGTCTTTGCCATCTTGTCATTTCGTAATGCAGAAGTGTGCGACTTGAGTGTATATATATATACTGTTGTGTGTCTGTGTGTGTGTTATATGCATACACGCACACACATCCGCACACCCATGCTAACAAAGCAATTCTTGAATATAGAGAGAGAGAGGTTTGCCTCCTGTGTCCTAATTTCTTTTGTTGGACAGAGGGAGACTGAGCAGAGGAACACTGGGCAGCTTGATTTTGTTCCGCTTTTTTATATTTCAGGATGTGTTGTCTGTAAGTGTTTATAAAGGCTGCTTGTATTGCTGCTGTGTATGACTTTCTTATCCAAAATATTGCTCGTGTGGTGTTTTTTCAGCAGATGAGCACCACAACACGCTGTGTTATGTCTCTGCCATCGTGTCATTCCGCAATGCAGAAGTGTGCGACTTGCATGTGTCGAGTAGGCTACATAAGTTATCTGAAAGGCACATGATCGCTCACGTCACGTTGGCCGCAGATTGATTAGTGTAACGTCTTGTATACAAAGTGTCATTGACAATCCTGTACACAGCGGTAAAACATTTAGTTATGCAGAAATTATTACAATATAGTTAAAATTTCGAAAATATTGATACCAAATTAAAAGATTCTGCATATCGATACTCGAGCATCAATGTGCACATCCCTATATGCAATTTCCAGCAGTTTATCCTCTTGCTCAGACATGGTGAATTCTCCTGATTTGTTGTCAAATGGGATCTATTCCTTGGCAGTTTGTGTGTCCTTCACTGGGCCTTTTCATTCATTCATTTTCTTGTCGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACCGCCAACTTATCCAGCAAGTTTTTATGCAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACATCCACACACACATTTACACACAATCATACACTACAGACAATTTAGCCTACCCAATTCACCTGTACTGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCAGAGGAAACCCACGCGAAGGCAGTCTCCACACAGAAACGCCAACTGAGCCGAGGTTCGAACCAGCAACCCAGCGACCTTCTTGCTGTGAGGCAACAGCACTACCTACTGCGCCTCTGCCTCGCACTGGGCCTTTTCCCCTTAGCAAAAAAACTTTCCAAAGACGTCTGTTTCTTACTATTATATTTTTTTTACTGTTAGTTGGTTAAATTTGGGCGCTCAAGTAACCAAGATGTAAGCGAGAGAATATGGCCATTTTTCAAAATAAAAGATTTTTCAAAATAAATTCAGACTCAGATAATAAATAAAACGAAAATAATTCATGATTTCTTGCGCGGCCCGGTATTAATTGATCGACCCGGTGGTTAAGGACCATTGGTTTAGGGTCAAGTATAAGTATATAGCGATTCACATAAGGACTGAAATTGTGTTTGAGGAAAAATGATTCCTAGTGGGAGATTTTGGGTCATTAGAATGGGGTGGTTTATGGTGACATTTATTAAATGATGAGTTTATTGTTGGATAG
Seq C2 exon
GATGAGTGTGAGGGGGATCTTGCGGAGGCAATGCCAGCACTGGAAGCAGCTCTGGCGGCTCTGGACACACTGAAGCCAGCTGATATTACTGTCCTGAAGACCATGCAGAATCCTCCTGGTCCTGTCAAACTGGTCATGGAGTCCATCTGTGTCATGAAGGGCATTAAACCAGAAAGGAAACAAGACCCTGGTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.0=100)
A:
NA
C2:
PF127772=MT=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]