GgaINT0013868 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15712562-15713714:-
Coord C1 exon
chr14:15713532-15713714
Coord A exon
chr14:15712761-15713531
Coord C2 exon
chr14:15712562-15712760
Length
771 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTCCCCAATGTCTTGACAGGAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTTGCAGAGATGCAGAAAGAACTGACCGCTCTTCAGCCTGAACTAATTCAAACTTCTGCAGAAACAGAAAAAATGATGATCCAGATTGAAAAAGAAACAGCTGAAGTAGACACAAAGAAGAAAATCGTGTCAGCAGATGAAAGGGAGGCTAATGAAGCAGCAGCTGCTGCAAAAGCTATTAAG
Seq A exon
GTACTGAATGGGGCTTCAGCCTGGAGGACGATGGGTTTTCAGCATCCTTCCAAGTAAGTTTGTATTATGATGTGTTAATGAGGTGAATGAGATGTTCCCGATACGAAGAAGGTAAATTTTGTCTGCTTAGTGTGTGACTGTCTTACAGTACCTGCAAATCTTCCCTTATTGGTTCCCATCCCAAAAGATACATAGCTTTTATTCCTGTTGGAATATATTCTGCTTTTCAGCAGATTGAGTACTGAGGTTAGACAGGTTCCAGTCCCAGAGATGGGGTTAGGTGAGCTGATGTGTGCCAGAGCTGTGTGGAGCCCTGCCGGGCAAAACCTAAGAGATGCTGATGCAGCCAGGTGTCTGTAGCACAGAATTTACGGTGGGAAGCTGCAGGAGTCCTCAGTATATTTTTGGAGCTAGTTGGAAAGGCCAATGATAGGTAATTACTGAGATCTGGGTATATGATAAAGAATTTAAGCTACACAGTATATATCTTCTACCTAATCAGCACTCTTAAATTAAGAGCAATTGTATCTAACCTGTTTTAATTCTTGTCAGACCAGAGAGACTTTGAGCTTGAAAGCTTGTTTGGCTTTCTCAGCTTTGGGTTGAGCTTATGGAATTTCCTAACTTCTCTACAAACCTTTCCTCTTCTAACTGTACAGACCAAAGTAGTTTCCTTTCCAAGAAGCAGAATGTTGTGGAGACTTCTTATTAGATACTTCCAGGCAGGGAGTGTTCTGTGAAACTACAGGCATCTCCCCAATGTCTTGACAG
Seq C2 exon
GATGAATGTGAAGGAGACCTTGCAGAAGCCATGCCAGCTTTGGAGGCAGCACTTGAAGCTCTTGATACCCTGAATCCTTCAGATATTTCTCTTGTGAAGTCCATGCAGAATCCACCTGGTCCTGTTAAGCTTGTCATGGAGAGTATCTGTGTCATGAAAGGAACTAAACCAGAGAGAAAACCTGATCCGAGTGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.313
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
NA
C2:
PF127772=MT=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTCTTCAGCCTGAACTA
R:
CTGCCACTCGGATCAGGTTTT
Band lengths:
356-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]