GgaINT0013868 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14996684-14997836:-
Coord C1 exon
chr14:14997654-14997836
Coord A exon
chr14:14996883-14997653
Coord C2 exon
chr14:14996684-14996882
Length
771 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTCCCCAATGTCTTGACAGGAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTTGCAGAGATGCAGAAAGAACTGACCGCTCTTCAGCCTGAACTAATTCAAACTTCTGCAGAAACAGAAAAAATGATGATCCAGATTGAAAAAGAAACAGCTGAAGTAGACACAAAGAAGAAAATCGTGTCAGCAGATGAAAGGGAGGCTAATGAAGCAGCAGCTGCTGCAAAAGCTATTAAG
Seq A exon
GTACTGAATGGGGCTTCAGCCTGGAGGACGATGGGTTTTCAGCATCCTTCCAAGTAAGTTTGTATTATGATGTGTTAATGAGGTGAATGAGATGTTCCCGATACGAAGAAGGTAAATTTTGTCTGCTTAGTGTGTGACTGTCTTACAGTACCTGCAAATCTTCCCTTATTGGTTCCCATCCCAAAAGATACATAGCTTTTATTCCTGTTGGAATATATTCTGCTTTTCAGCAGATTGAGTACTGAGGTTAGACAGGTTCCAGTCCCAGAGATGGGGTTAGGTGAGCTGATGTGTGCCAGAGCTGTGTGGAGCCCTGCCGGGCAAAACCTAAGAGATGCTGATGCAGCCAGGTGTCTGTAGCACAGAATTTACGGTGGGAAGCTGCAGGAGTCCTCAGTATATTTTTGGAGCTAGTTGGAAAGGCCAATGATAGGTAATTACTGAGATCTGGGTATATGATAAAGAATTTAAGCTACACAGTATATATCTTCTACCTAATCAGCACTCTTAAATTAAGAGCAATTGTATCTAACCTGTTTTAATTCTTGTCAGACCAGAGAGACTTTGAGCTTGAAAGCTTGTTTGGCTTTCTCAGCTTTGGGTTGAGCTTATGGAATTTCCTAACTTCTCTACAAACCTTTCCTCTTCTAACTGTACAGACCAAAGTAGTTTCCTTTCCAAGAAGCAGAATGTTGTGGAGACTTCTTATTAGATACTTCCAGGCAGGGAGTGTTCTGTGAAACTACAGGCATCTCCCCAATGTCTTGACAG
Seq C2 exon
GATGAATGTGAAGGAGACCTTGCAGAAGCCATGCCAGCTTTGGAGGCAGCACTTGAAGCTCTTGATACCCTGAATCCTTCAGATATTTCTCTTGTGAAGTCCATGCAGAATCCACCTGGTCCTGTTAAGCTTGTCATGGAGAGTATCTGTGTCATGAAAGGAACTAAACCAGAGAGAAAACCTGATCCGAGTGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.313
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
NA
C2:
PF127772=MT=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTCTTCAGCCTGAACTA
R:
CTGCCACTCGGATCAGGTTTT
Band lengths:
356-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]