GgaEX0002952 @ galGal3
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15709588-15713714:-
Coord C1 exon
chr14:15713532-15713714
Coord A exon
chr14:15712562-15712760
Coord C2 exon
chr14:15709588-15711729
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCAATGTCTTGACAGGAT
3' ss Score
9.1
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
GTTGCAGAGATGCAGAAAGAACTGACCGCTCTTCAGCCTGAACTAATTCAAACTTCTGCAGAAACAGAAAAAATGATGATCCAGATTGAAAAAGAAACAGCTGAAGTAGACACAAAGAAGAAAATCGTGTCAGCAGATGAAAGGGAGGCTAATGAAGCAGCAGCTGCTGCAAAAGCTATTAAG
Seq A exon
GATGAATGTGAAGGAGACCTTGCAGAAGCCATGCCAGCTTTGGAGGCAGCACTTGAAGCTCTTGATACCCTGAATCCTTCAGATATTTCTCTTGTGAAGTCCATGCAGAATCCACCTGGTCCTGTTAAGCTTGTCATGGAGAGTATCTGTGTCATGAAAGGAACTAAACCAGAGAGAAAACCTGATCCGAGTGGCAGTG
Seq C2 exon
GTAAAATGATAGAAGACTACTGGGGGCCCTCTAGAAAAATTCTTGGAGATCTGAAGTTCCTGGAGAGCTTGAAGACGTACGACAAGGATAATATTCCTCCAGCTGTAATGAAGAGAATTAGAGAGAGGTTTATTGATCATCCAGATTTTCAGCCAGCTGTCATTAAAAATGTCTCATCAGCCTGTGAAGGACTGTGTAAGTGGGTGCGAGCCATGGAGGTCTATGACCGCGTTGCAAAAGTGGTTGCCCCGAAACGTGAACGTTTGAGAACTGCAGAAGAGTTACTGGATGTTCAAATGCAGAAGCTAAAGACAAAGCAGGCGGAACTTAAGCAGGTTGTTGATCGCCTCCAAGCTTTGAATGATGACTTTGAAAGCATGAATGACCGGAAGAGAGAGTTAGAAAACAATATTGAACTCTGCTCACAAAAACTTGTGAGAGCTGAACAGCTCATTAGTGGTCTTGGTGGAGAGAAAGATAGGTGGACAGAAGCTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.313 C2=0.008
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
PF127772=MT=FE(18.8=100)
C2:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAAGAACTGACCGCTC
R:
ACGTCTTCAAGCTCTCCAGGA
Band lengths:
251-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]