BtaEX0011597 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18870105-18948717:-
Coord C1 exon
chr25:18948535-18948717
Coord A exon
chr25:18883888-18884086
Coord C2 exon
chr25:18870105-18872246
Length
199 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGTGCTGCCTACAGAAC
3' ss Score
9.7
5' ss Seq
GCGGTAACC
5' ss Score
5.41
Exon sequences
Seq C1 exon
GTAGCCGTCATGCAAGTGGAACTGACTGCCCTCCAACCCCAACTCATTCAGACCTCTGAGGAGACCGCTAAGATGATGGTGAAAATCGAGGCAGAGACTCAAGAAGCTGATGCCAAGAAACTTCTAGTGCAAGCAGATGAAAAAGAAGCCAATGCTGCTGCTGCCATTGCTCAAGGAATCAAG
Seq A exon
AACGAATGCGAAGGGGACTTGGCAGAGGCAATGCCAGCGCTCGAGGCTGCGCTTGCTGCACTGGACACGCTGAACCCGGCAGATATCTCGCTGGTGAAGGCCATGCAGAACCCACCTGGGCCTGTCAAGCTGGTCATGGAGAGCATCTGTGTGATGAAAGGGCTGAGACCAGAGAGGAAGCCGGACCCCAGTGGCAGCG
Seq C2 exon
GTAAAATGATAGAAGATTACTGGGGGGTATCGAGAAAGATTCTCGGAGATCTGAAATTCTTGGAAAGTCTCAAGACATATGACAAAGACAACATTCCCCCAGTCATCATGAAGCGGATCCGGGAAAGGTTTATCGATCACCCAGATTTCCAGCCTGCTGTAATTAAAAATGTATCATCTGCATGTGAGGGTCTGTGCAAGTGGGTGAGGGCCATGGAGGTGTATGATCGTGTGGCCAAAGTGGTGGCTCCCAAACGGGAGCGGCTGAAGGAGGCTGAGGGGAAGCTGGACACACAGATGCAGAAACTGAACCAGAAGCGAGCAGAGCTGAAGCTAGTGGAAGACCGCCTCCAGGCCCTGAATGACGACTTTGAAGAGATGAATACCAAGAAAAAGACACTGGAGGGAAACATTGAAATCTGTTCCCAAAAGCTGATCAGAGCAGAAAAACTGATTAGTGGTCTTGGAGGAGAGAAAGACAGATGGACAGAAGCCGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'52-54,'52-53,53-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.194 C2=0.013
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
PF127772=MT=FE(18.8=100)
C2:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCAGAGACTCAAGAAGC
R:
GGCTGGAAATCTGGGTGATCG
Band lengths:
251-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development