GgaEX0002952 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14993710-14997836:-
Coord C1 exon
chr14:14997654-14997836
Coord A exon
chr14:14996684-14996882
Coord C2 exon
chr14:14993710-14995851
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCAATGTCTTGACAGGAT
3' ss Score
9.1
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
GTTGCAGAGATGCAGAAAGAACTGACCGCTCTTCAGCCTGAACTAATTCAAACTTCTGCAGAAACAGAAAAAATGATGATCCAGATTGAAAAAGAAACAGCTGAAGTAGACACAAAGAAGAAAATCGTGTCAGCAGATGAAAGGGAGGCTAATGAAGCAGCAGCTGCTGCAAAAGCTATTAAG
Seq A exon
GATGAATGTGAAGGAGACCTTGCAGAAGCCATGCCAGCTTTGGAGGCAGCACTTGAAGCTCTTGATACCCTGAATCCTTCAGATATTTCTCTTGTGAAGTCCATGCAGAATCCACCTGGTCCTGTTAAGCTTGTCATGGAGAGTATCTGTGTCATGAAAGGAACTAAACCAGAGAGAAAACCTGATCCGAGTGGCAGTG
Seq C2 exon
GTAAAATGATAGAAGACTACTGGGGGCCCTCTAGAAAAATTCTTGGAGATCTGAAGTTCCTGGAGAGCTTGAAGACGTACGACAAGGATAATATTCCTCCAGCTGTAATGAAGAGAATTAGAGAGAGGTTTATTGATCATCCAGATTTTCAGCCAGCTGTCATTAAAAATGTCTCATCAGCCTGTGAAGGACTGTGTAAGTGGGTGCGAGCCATGGAGGTCTATGACCGCGTTGCAAAAGTGGTTGCCCCGAAACGTGAACGTTTGAGAACTGCAGAAGAGTTACTGGATGTTCAAATGCAGAAGCTAAAGACAAAGCAGGCGGAACTTAAGCAGGTTGTTGATCGCCTCCAAGCTTTGAATGATGACTTTGAAAGCATGAATGACCGGAAGAGAGAGTTAGAAAACAATATTGAACTCTGCTCACAAAAACTTGTGAGAGCTGAACAGCTCATTAGTGGTCTTGGTGGAGAGAAAGATAGGTGGACAGAAGCTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.313 C2=0.008
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
PF127772=MT=FE(18.8=100)
C2:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAAGAACTGACCGCTC
R:
ACGTCTTCAAGCTCTCCAGGA
Band lengths:
251-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]