DreEX6096487 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39601344-39606488:+
Coord C1 exon
chr24:39601344-39601526
Coord A exon
chr24:39604035-39604233
Coord C2 exon
chr24:39604347-39606488
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATGAGTTTATTGTTGGATAGGAT
3' ss Score
4.06
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTAGCAGTCATGCAGCAGGAGCTCACAGCTCTACAGCCAGAACTTATCGAGACCGCGAAACAGACTGATCAGATGATGGTGAAGATAGAAAAAGAGACAGTGGAGGTGGATGCTAAGAAAGAGCTTGTCAGTGCCGATGAGAAAGTGGCCAATGAAGCAGCAGCTGCTGCTAAAGCGATCAAG
Seq A exon
GATGAGTGTGAGGGGGATCTTGCGGAGGCAATGCCAGCACTGGAAGCAGCTCTGGCGGCTCTGGACACACTGAAGCCAGCTGATATTACTGTCCTGAAGACCATGCAGAATCCTCCTGGTCCTGTCAAACTGGTCATGGAGTCCATCTGTGTCATGAAGGGCATTAAACCAGAAAGGAAACAAGACCCTGGTGGATCAG
Seq C2 exon
GAAAGATGATTGAAGACTTCTGGGGACCATCTAAGAAGATTCTAGGTGACATGAAGTTCCTCGAGAGCCTTAAAACATTCAACAAGGACAACATACCTCCTGCTAGCATCAAGAAAATCAGAGAAAAGTTCATAGATCACCCTGATTTTCAGCCTTCAGTAATCAAAAGCGTGTCTTCTGCTTGTGAGGGCCTTTGCAAATGGGTGCGTGCCATGGAAGTGTACGAGCGTGTGGCCAAAGTTGTCGCCCCGAAGAAAGAGAAACTGAAAGAAGCAGAGGAAGAGTTAGCCGTGCAGATGCAGAAGTTGAATGTGAAACGTGCCGAGCTGAAGGAGGTGGAGGACCGTCTGCAGGCACTCAATGACACATTCGAAGGGATGATACAGAAGAAGAAAGACCTAGAGGCAAACATCGAGCTCTGTTCGCAGAAACTTGTACGAGCTGAAAAACTAATCGGTGGTCTGGGAGGAGAAAAAGACCGGTGGACAGAGGCCGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.194 C2=0.007
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.0=100)
A:
PF127772=MT=FE(18.8=100)
C2:
PF127772=MT=PD(59.1=29.1),PF083176=Spc7=WD(100=22.2),PF127812=AAA_9=WD(100=32.2),PF0302810=Dynein_heavy=PU(18.4=18.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCAGTGCCGATGAGAA
R:
CAAAGGCCCTCACAAGCAGAA
Band lengths:
257-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]