MmuEX6013665 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127094108-127105831:-
Coord C1 exon
chr7:127105649-127105831
Coord A exon
chr7:127099519-127099717
Coord C2 exon
chr7:127094108-127096249
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTGTTCTCCACAGAAT
3' ss Score
11.43
5' ss Seq
CCGGTAACC
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTGGCTGTCATGCAGGTAGAGCTCACTGCCCTTCAGCCTCAGCTCATCCAAACCTCTGAGGATACAGCGATGATGATGGTGAAAATTGAGCTGGAGACAAAAGAAGCTGATGCCAAGAAACTTCTGGTGCAGGCAGATGAGAAGGAGGCTAATGCTGCTGCTGCCATCTCTCAGGCGATCAAG
Seq A exon
AATGAGTGTGAGGGAGACCTGGCCGAGGCCATGCCAGCACTTGAGGCTGCCCTTGCTGCCCTCGACACCCTGAACCCATCTGACATCACGCTGGTGAAGTCCATGCAGAACCCACCAGGCCCTGTCAAGCTGGTTATGGAGAGCATTTGCGTCATGAAGGGGCTGAAGCCAGAGAGGAAGCCAGACCCCAGTGGCTCCG
Seq C2 exon
GTAAAATGATAGAAGATTACTGGGGAGTGTCAAGAAAGATCCTTGGAGATCTAAAGTTCTTGGAAAGTCTCAAGACATACGACAAAGACAACATCCCTTCGGTGATCATGAAGCGAATCCGGGAAAGGTTTATTGATCACCCTGATTTCCAGCCAGCTGTCATTAAAAATGTATCATCTGCCTGTGAGGGCCTGTGCAAGTGGGTGAGGGCCATGGAAGTGTATGACCGAGTGGCCAAGGTTGTGGCTCCCAAACGGGAGCGACTGAGGGAGGCTGAGGGGAAGCTGGAGATCCAAATGCAAAAACTGAACCAGAAACGGGCGGAGCTGAAGCTGGTGGAAGACCGACTCCAAGATCTCAATGACGAGTTTGAACTGATGAACAGAAAGAAAAATTCACTGGAGAAAAATATAGAAATCTGCTCCCAGAAGCTCGTCAGGGCAGAGAAGCTTATCAGTGGCCTTGGAGGAGAGAAGGACAGATGGACAGAGGCTGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.209 C2=0.004
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.1=100)
A:
PF127772=MT=FE(18.8=100)
C2:
PF127772=MT=PD(59.0=29.0),PF127812=AAA_9=WD(100=32.3),PF0302810=Dynein_heavy=PU(18.4=18.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCTCTCAGGCGATCAAG
R:
CGGTCATACACTTCCATGGCC
Band lengths:
250-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: