DreINT0009478 @ danRer10
Intron Retention
Gene
ENSDARG00000073731 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr7:28708774-28709445:+
Coord C1 exon
chr7:28708774-28708881
Coord A exon
chr7:28708882-28709330
Coord C2 exon
chr7:28709331-28709445
Length
449 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
CTTTTCTTGTGTTCACACAGGTG
3' ss Score
11.11
Exon sequences
Seq C1 exon
ATCTATCGACGCTGCTGGCTGGTGTTTAAGAAGTCATCCAGTAAAGGACCTCGCAGACTGGAAAAATACCCTGATGAGAAGTCAGCCTACATCAGAGCCTGTCCTAAG
Seq A exon
GTACACTTCTCACCCCAACAGTTCAGCCGAGGCCTAATCTGAGCCGCGGAAATGTCACAGGAGAAATGAAACATTCAAGGAAAACATTCAAGTGTCACTTCAGTTCTCCAATTATACTAACAGCCGCGTAGAGCACATTCACACAGCGCGAGCTGCCGGCCGAGATTACCAAAGCGGCAGTGTGTAAACAGATACATTTTTGAATAAATGTATCCATGCAACTTTGCTGACTCACAGGCCTCCTATTTCTGTGTGTTCGTTGGCCTCATTTGCCTTTCTTTACTACACTTTTTTGCTCCCACAAGCCGCTGTAGAGCGTGAATGATAAATTAGATGATTAAGAGAGCACAAGTGCCTTGCCAAATGATGCAAATGATGTTAGTCTGTATAACTGGGCTCTGTCAGTTTCTTCTCACTTTGCATTGAGTGCTTTTCTTGTGTTCACACAG
Seq C2 exon
GTGACAGAGATTAGTAATGTGAAGAACGTCACAAGATTGCCTCGTGACACGAAGCGACAGGCCGTGGCCATCGTTTTTACAGACGACACCTCTCGAACCTTCACCTGCGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073731:ENSDART00000113998:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(33.7=100)
A:
NA
C2:
PF0016924=PH=FE(36.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTATCGACGCTGCTGGCT
R:
TGATTCGCAGGTGAAGGTTCG
Band lengths:
222-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]