GgaINT1011790 @ galGal4
Intron Retention
Gene
ENSGALG00000001160 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr11:555287-555594:+
Coord C1 exon
chr11:555287-555394
Coord A exon
chr11:555395-555479
Coord C2 exon
chr11:555480-555594
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACACCGTGCCACCCCTCCAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
ATCTACCGGCGGTGCTGGCTCGTCTTCCGCAAGTCCTCCAGCAAAGGGCCCCAGCGCCTGGAGAAGTACCCGGATGAGAAGGCAGCGTGCCTGCGGGGCTGCCCCAAG
Seq A exon
GTGAGCGGCCACGGCCGGGGGGTGCCCCGCATCACCCCCTCCCCACTCCCGGCACGGCCCCGGCGACACCGTGCCACCCCTCCAG
Seq C2 exon
GTGACCGAGATCAGCAACGTCAAGTGCATCACGCGGCTGCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCGTCTTCGCCGACGACTCCGCGCGTACCTTCACCTGCGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001160:ENSGALT00000001745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(39.3=97.2)
A:
NA
C2:
PF0016924=PH=FE(42.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAAGTACCCGGATGA
R:
CCGAATCGCAGGTGAAGGTAC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]