MmuINT0052595 @ mm9
Intron Retention
Gene
ENSMUSG00000040631 | Dok4
Description
docking protein 4 [Source:MGI Symbol;Acc:MGI:2148865]
Coordinates
chr8:97391028-97391399:-
Coord C1 exon
chr8:97391292-97391399
Coord A exon
chr8:97391143-97391291
Coord C2 exon
chr8:97391028-97391142
Length
149 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
3' ss Seq
CTCTTGGGATATCTTTCCAGGTG
3' ss Score
8.06
Exon sequences
Seq C1 exon
ATTTACCGGAGGTGCTGGCTGGTGTTCCGGAAATCTTCCAGCAAGGGGCCCCAGCGGCTGGAGAAGTATCCTGATGAGAAGTCCGTGTGCCTCCGAGGCTGCCCCAAG
Seq A exon
GTTAGGGGCCTGGGTCCTAGATCCCCCAACCTGTGAGCAAAGATGACTTGCTGAGTCCTGAGGTCTGAGAGTACCTTCCTGGGGAACCCAGCTAAGGAGGTAAGGTGAAGTGCCCCGGCCTGGCTAAATCTCTTGGGATATCTTTCCAG
Seq C2 exon
GTGACTGAGATTAGCAACGTCAAGTGTGTCACACGGCTCCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCATATTCACAGACGACTCCGCTCGCACCTTCACTTGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040631-Dok4:NM_053246:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(33.7=100),PF065348=RGM_C=PU(34.2=75.0)
A:
NA
C2:
PF0016924=PH=FE(36.5=100),PF065348=RGM_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGGCTGGTGTTC
R:
TGAGTCACAAGTGAAGGTGCG
Band lengths:
214-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: