DreINT0009479 @ danRer10
Intron Retention
Gene
ENSDARG00000073731 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr7:28709331-28713538:+
Coord C1 exon
chr7:28709331-28709445
Coord A exon
chr7:28709446-28713418
Coord C2 exon
chr7:28713419-28713538
Length
3973 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GAATCTGCTTGTTCTCTCAGAGC
3' ss Score
7.76
Exon sequences
Seq C1 exon
GTGACAGAGATTAGTAATGTGAAGAACGTCACAAGATTGCCTCGTGACACGAAGCGACAGGCCGTGGCCATCGTTTTTACAGACGACACCTCTCGAACCTTCACCTGCGAATCAG
Seq A exon
GTACGTCATCTTTTACTGGGACTTGTTTTGCTGCAGGATGCTTGACTAAAAGCTGCAGTTTGTTTTGTTAAAGATTATCCCAAAAATATTTTAAGCAAGTACAAAGCGCAGGGTCAGCCCAATATACAGTGGTAAGCTTGTAATAATGTTTTCTAATTTGAGTGGTACTGGTAGACAGTAGTGGAAAAAGTACTGAAAAATATTAAACAAAGGTGCCAATACTTGCCAAACAAATAAGCACAAGTAAAGTTTTTCTCTCTGCTGAGTATTTTTTAAATACTACTCAAAGTATGAGCGAAAAGTAGCTCTTCTAAAGTAATCAAGATAGTGAATAGCAAGTATTATGCTCTGAAAATGATTCCACCTTATACCCTGTGAATGAAAAATGAAGCTAACGTCAGTGACATTTTCTTTTAATGCTGTTTCTAAGTGTAAGTTCAATTAGTTTTCATTCATGGACTATAATTTCAAACCTGCCTTTTCTATCAAAGATACTAGAAAAAGTCATATCTGCTTAACTATGTTCCTTCCTACAAAGAAACAATACTTATGAAAAATTTCTATCTAGATTTAGAGCATTTCATAACACAGAAACAGCACTTTTACAGCACAGTTACAAATGAACAGCTCCTGGTTGCATTTCTCTCTTAGTGTTGTTGGACTTAAGTGCAGCATTTGATACAATCAATCATAATATTCTCCTTGATAGGCTTGAAAATGATGTTGGTATTAAAGAAACCACATTGTTCTGGTTCAGGTCTTATCTATCTGAACGTTATCAATTTGCTTCAGTTAATGAAGAGGCATCATACACATCAAAAGTACACTGTGGGGTACCACAAGGCTCAGTTCTTGGTCCCTTACTTTTCACACTGTATATGCTACTGGTGATATGGAGTTAGCTTCCACTGTTATGCTGATGATACACAACTTTATATCTCCTCTCAACCAGGGTTGGGCCGATTGCCATCATCCATAGACAACACCACCCCGCCCCCATCGCAAACCCACTTGCGAAAATTACATACTTATTCCCCATTTACACCTATGTGTCTTAGTGTTAAAGTGGCATTTTAGAACGAAAATGATCCATATCCACACAATGTTTTACCTAGCATTTCTGAACAGCCCTCCGTCCACTGAAAATGCACATTACGCGACCATACACACACATAGCCACACACACTGTCATGCGCTCGTCTGACCTCCAGTGAGCAGTGCACATCGGACAGTTTATCAAGGATGTACCGTTGGATCGCGTCTCACTATAGTTGTTAAACGTGATATTCAGACATCCCAAGTCTCCCGAGAGTTCCAGGAGTCTCCCGCAAATGCATAGAGACTCCCGAATGTGCGTAAACGAGTGATAAATTCCCGAAAATCGTCTCCCTCCCGGTCCTCAAATAAGTCACGCATTCTTCTCACCACCGGATTCCTCCTTGCTCTTCAGACTCATCGCGCACACTCTGTCAAACCCATGCTTTTCGCATGATGACGATGTCATCGTCCATCTCGATGTTTCACATAGACATCGCCCAACCCTACTCTCAACCTAATAATTTGTACGAATTTACAACGGTTTGTGTAGCCGATATTAAAAATTGGATAACTAAAACTCCTTATTACTAAATTCAGATAAAATTGAGGCTTTGCTAATTGGACCCAAAAACCTCACACGCAAAAACCTAGAACACTGTCTATCCTTGATGGATTTTCAGTTCAGTCCTCATCTTCAGTCAAAAATTTGGGGGTGATTTTTGAGAGCAACCTGGTGTTTGAGTGCCGGATTGCAAGCATTTGTATTGTATATAAATTGAAAATCTAATTGAATGAGAACACATGCCATTAATATATGCACCTATAATAAGCCTGAAAAGCATGTTGACAGAAAACAGGTTGATGCATTTACATGCAGGAGGAAATCTGTATAACCTTGTGTAACCAGTAAAGCAAAGCTTTACTGTAGTTGTGCTGATATGTTAAGGCTTGGGTTTTGCATTTTGAACCCTGACTAACAAACTACAAGTGTCTAGCAGGTGGCACCACAAACCAAGCTTGTGCAGCACTGACAGAATACATGCAATTTGTGCATGTGTTTGAAAACATAACATTCTGTAATGCATGTACTTATTGTTTTAGGCCATTTGGTGATTTCAGTTCACACCACGTGACAAAAGTCTTGCTGTCAATCTCAGTTGTTGGAGCAACAAATAATAACTTGACTTCTTGTTGACTATTTGGAAAAGTGGCAAAAGGTAAAATCATCCGTTGAACTGCATCCCAATCATCACAAATACTACAGAACACCTATTGAAACCTGCATGGACCCAAGATTCTCAAAGAAATCAGTCAAGTTTAGTAAAGAAAAAATCATGATGTGGGGTTACATTCAGTATGGGGGCATGCAAAATATCTACAGAGTGGATGGCAACATCATACATGAGGTATCAAGACATTGGTGCTGCCAATTACACTACAAACCACAAGAGAGGGCAAATTCTTCAGCAGGATAGCACTTCAGCCTCCACATCAAAGTTCCTAAAAAGCAAAGAAGGTCAAAGTGCTCCAGGATTGACCAGCTCAGTCACCAGACATGAACATTATTGAGCATGTCTGGGTTAAGATGTAGGAGGCATTGAAGAAAGAATCTTGATAAAGTCCTGCAAGAAGGCTTTCTTTGCCATTCCAGATGACTTTATTAAAAAGTCATTTGAGTCATTGCAGAGATTTAAAGATGCAGTCCTCCAAGCTCACCAGGACTTTAAATGTTATACTGTACATTATTTCTGTTAAGTGACAAGAATTTTGTCTTAGCAAAGTCAGACCTTACTGTCCTAATTAAATAATCAATAATCAAGGCATGATCATATTTTATTTTAATAAAATGAGCGTAATCTATTTCCCAGAGATGGGTTGTGGCTGGAAGGGCATCCGCTGCGTTAAAACTTGCTGGATAAGTTGGCGGTTCATTTCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGAGTGTAATCTAGAAGCCTTTGCCTTTCATATAAGCCACTTCTGATACCAAATGATCAACTAGAAGTCAAGTTATTATTTGTTGTTCCCAAAACTTAGATAGGCGACAAGACTTTTGTCAGGTAGTGTACAGCAGACATCCTTCATCTTCTCATCAGTGACATGCACTCTAGACTGTTCTGCAGTCATTAAATGTAATGATTTGTGTACAATGTGTACAAACAGTGCATGTTTGTAATAAAGGAAAGACAGTAAAATTGCTATGTAACTCATAGCCGCTGGAATCACCACATTCAGCTATATAGTCAACAGTCAACTATATGCGAGGATAATGGATTTGCTGCAAGTAGTGTTAGACATGCAAAAACAAAAGTTAAACGTATGTGTGTGCGCCTGTATTTGTACTACGAACATGCATCAGCATTTGTTTCATTCATAGTTTTAGAAAAGCATGTATAAACTCCACAACAAATACATCAAATAAACATACTTGGTATTTTGACTAAAACTGAATCTGCTTTATCTATGTCTGTCTTTGTCACTGACTGCTGTTTATCTGACATAACGCAGGAGAAGCAGACACGCATGTGAAAACTGTGGGTGGGGAGAACCAGTCCATTTACATTTAAAGGCACAAGCAACAAAAACAACTACAATGTCCTCTAAGCTTAAAATTCACATACAGTATTCAGCAGGATGTAAAAATGATCTGATGGGAATTTTAGCTGTAACTTTAAAGACATTCTGGAGACACCAAAGTCTTTATCTTACAACTTGTTAAAGGGGTAAAATAGAAGCCCTTTAAAGGAGCTCTCGTTATTGACATTAACATTACAGTCTGATCTCTTACTGTCCTCTAGCGTATGTTTTATTCATGTAGAAGGTAGATTGAAAGATCACGCTTGAATTTATTGACATGATTGAATCTGCTTGTTCTCTCAG
Seq C2 exon
AGCTGGAGGCTGAGGAGTGGTTTAAGACCTTGTCTATCGAGTGCCTGGGGACGCGTCTGAATGACATTAGTCTTGGAGAGCCAGACCTCCTGGCCGCTGGAGTTCAGTGTGAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073731:ENSDART00000113998:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100)
A:
NA
C2:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]