RnoINT0050520 @ rn6
Intron Retention
Gene
ENSRNOG00000015679 | Dok4
Description
docking protein 4 [Source:RGD Symbol;Acc:1310084]
Coordinates
chr19:10571831-10572318:+
Coord C1 exon
chr19:10571831-10571945
Coord A exon
chr19:10571946-10572198
Coord C2 exon
chr19:10572199-10572318
Length
253 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TAAGTGCTATTTTTCTCTAGAGC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTGACTGAGATCAGCAACGTCAAGTGTGTCACGAGGCTCCCCAAGGAGACCAAGAGACAGGCGGTGGCCATCATATTCACGGATGACTCTGCTCGCACCTTCACTTGTGACTCAG
Seq A exon
GTGAGGCCCCAGGGCTGCAGGCTCCATCTGCTCTTCTTGGGCTGGTCGGTCAGTGGTCCAGGCAGCGGCTACCAGAGCAGGGCCAACTGTTGCAGGAAGAGTGGGAGAGTTGTGTCTCTCCTTAGTGGAGTAGGTCTCAGACGGAGGTAGGCAGGCAGGCAGCAAGGCCTCCCTGCAACGTCAAGCCAGGGCAGACTGGGTGGGCTGCTGGGACTCTGAGCTGATAGAACTATTAAGTGCTATTTTTCTCTAG
Seq C2 exon
AGCTGGAGGCAGAGGAGTGGTACAAGACACTGTCAGTAGAGTGTCTGGGATCACGGCTCAATGACATCAGTCTGGGAGAGCCAGACCTCCTGGCCCCAGGAGTACAGTGTGAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015679:ENSRNOT00000021037:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100)
A:
NA
C2:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATCAGCAACGTCAAGTGT
R:
TGTCTGCTCACACTGTACTCCT
Band lengths:
229-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]