MmuINT0052596 @ mm10
Intron Retention
Gene
ENSMUSG00000040631 | Dok4
Description
docking protein 4 [Source:MGI Symbol;Acc:MGI:2148865]
Coordinates
chr8:94866748-94867242:-
Coord C1 exon
chr8:94867128-94867242
Coord A exon
chr8:94866868-94867127
Coord C2 exon
chr8:94866748-94866867
Length
260 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAAGTGCTATTTTTTTCTAGAGC
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTGACTGAGATTAGCAACGTCAAGTGTGTCACACGGCTCCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCATATTCACAGACGACTCCGCTCGCACCTTCACTTGTGACTCAG
Seq A exon
GTAAGGCCCCAGGACTGCAGGCTCCATCTGCTCTCCTCGGGCTGGTCAGTCAGTGGTCTAGGCAGTGAGTACCAGAGCAAGGCCAACCCTTGCAGAAAGAGTGGGAGAGCTGTGCCCTTAGTGGAGTAGGTCGCAGACAGAGGTGGGCAAGGCAGGCAGCAAGGCCTTCCTGCATGGTGCAATGAGTCAACCCAGGGCAGATTAGGTGGGCTGCTGGGGCCTCTGAGCTGGCAGAACTATGAAGTGCTATTTTTTTCTAG
Seq C2 exon
AGCTGGAGGCAGAAGAGTGGTACAAGACACTGTCCGTGGAATGTCTGGGATCACGGCTCAATGACATCAGCCTGGGAGAGCCTGACCTCCTGGCTCCAGGAGTACAGTGTGAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040631:ENSMUST00000046461:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100)
A:
NA
C2:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGAGATTAGCAACGTCA
R:
TGCTCACACTGTACTCCTGGA
Band lengths:
230-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types