GgaINT0024976 @ galGal3
Intron Retention
Gene
ENSGALG00000001160 | DOK4
Description
NA
Coordinates
chr11:549150-549460:+
Coord C1 exon
chr11:549150-549267
Coord A exon
chr11:549268-549340
Coord C2 exon
chr11:549341-549460
Length
73 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGG
5' ss Score
8.92
3' ss Seq
CCACGCTGTGTGCCTTGCAGAGC
3' ss Score
9.73
Exon sequences
Seq C1 exon
CAGGTGACCGAGATCAGCAACGTCAAGTGCATCACGCGGCTGCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCGTCTTCGCCGACGACTCCGCGCGTACCTTCACCTGCGATTCGG
Seq A exon
GTACGGGCTGACGCCGCGGGCTGTGCGATGCCGGGCTGCGGGGCGCCGCGCCGCCACGCTGTGTGCCTTGCAG
Seq C2 exon
AGCTGGAGGCCGAGGAGTGGTACAAGGCGCTGTCGGTGGAGTGCTTGGGTGCCCGACTCAACGACATCAGCCTGGGGGAGCCCGACCTGCTGGCGGCCGGCGTGCAGTGCGAGCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001160:ENSGALT00000001745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217412=IRS=PU(2.0=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAACGTCAAGTGCATCA
R:
CCAGGCTGATGTCGTTGAGTC
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]