DreINT0009798 @ danRer10
Intron Retention
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1336448-1337327:-
Coord C1 exon
chr19:1337249-1337327
Coord A exon
chr19:1336624-1337248
Coord C2 exon
chr19:1336448-1336623
Length
625 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GAATATTTCTATTGGATCAGGAC
3' ss Score
4.28
Exon sequences
Seq C1 exon
GTATGTTGGTGAGCTGATATCTGATGCTGAAGCAGACGTGAGAGAGGACGATTCATATCTCTTTGACCTGGACAACAAG
Seq A exon
GTGTGTGTGTTTTCATCAAAATAAATTAAATTCCCTGATACAAATTACAACCACTGTCATGTTTGCTTATGTCATGCCAGGATTTTATTATAATATGGGGTTCAAGGTATGGCACATATGAAAAATAAATGAATGTACAATGCTAAAAAATTGCATAAAAACAAAGTAACTGATATAAATGTAAAAAATAAATACATTATTTATTCTTATATATGTTTTTTTATTACTGAATATCACTGAAACTAAAATATGTTGGGGCTGGTAGTAATTATTCTGTACTATTAAAGGTTTTATTAGTATTAAATATTTTGATAATTATTTTATGTTAATTAAATGTTTAGTGCTCTTCTCTCTTTAACTTTCCATTTTTTAAATTGCTGTTTTATGTTTACTGATTTTGAGAAAAATCATTAACAAATAATTAATTATTGCAAATAGTTTTTTATTATTAATTTCCCATCTGTAACGCTACTTTTTAATTGTCATGTTTAATTTTTGTGACCTTTTTTATTCATTTATTATTTCTGTTTTTACTTTAGCTCTACCGCAGATGTTTTAATTTATGTTAATTAGTTTTCTATTAATTTATTTCATCCATTTATTATGAATATTTCTATTGGATCAG
Seq C2 exon
GACGGTGAGGTGTACTGTATCGATGCCCGCTATTACGGAAACATCAGCCGCTTCATAAACCATCTGTGTGACCCGAACATCATCCCTGTGCGTGTGTTTATGCTGCATCAGGACCTGCGCTTCCCTCGCATCGCTTTCTTCAGCTCCAGAGACATCTTCACCGGACAGGAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325:ENSDART00000168138:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
NA
C2:
PF0085623=SET=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTTGGTGAGCTGATATCTGA
R:
CGAGCTCCTGTCCGGTGAAG
Band lengths:
254-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]