HsaINT1012316 @ hg38
Intron Retention
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr6:31880673-31881092:-
Coord C1 exon
chr6:31881014-31881092
Coord A exon
chr6:31880849-31881013
Coord C2 exon
chr6:31880673-31880848
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGCCATCCCCCTGCCCCAGGAT
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTATGTCGGGGAGCTGATCTCTGATGCTGAGGCTGATGTGAGAGAGGATGATTCTTACCTCTTCGACTTAGACAACAAG
Seq A exon
GTGAGCAGGAGACCCTCCTTACCCTGCTGCTCCCCAGGGCTGGCTTTCAGGAGCCTCTGGGAAGTCAGCAAATGGAAACCTGGGGAGGAGGGACTGGGGAGTCAGTGGGTGGGGAGGGCAAGCAGGGTCGGGGGAGATGTGAAGAGTGCCATCCCCCTGCCCCAG
Seq C2 exon
GATGGAGAGGTGTACTGCATAGATGCCCGTTACTATGGCAACATCAGCCGCTTCATCAACCACCTGTGTGACCCCAACATCATTCCCGTCCGGGTCTTCATGCTGCACCAAGACCTGCGATTTCCACGCATCGCCTTCTTCAGTTCCCGAGACATCCGGACTGGGGAGGAGCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371:ENST00000375537:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
NA
C2:
PF0085623=SET=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGGAGCTGATCTCTGATG
R:
CTCCCCAGTCCGGATGTCTC
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains