RnoINT0053584 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4591560-4591982:+
Coord C1 exon
chr20:4591560-4591638
Coord A exon
chr20:4591639-4591806
Coord C2 exon
chr20:4591807-4591982
Length
168 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CTGTGTGCCCCACTCCCCAGGAT
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTACGTCGGGGAGCTGATCTCCGACGCCGAGGCAGACGTGAGAGAGGATGATTCTTACCTCTTCGACTTAGACAACAAG
Seq A exon
GTGGGAAGGCAGCACCTTTGTCCTCACTACCAAAGGCTGCTTTCTGGAGCCACCTGGGACATCTGGGAGTGGAGACCTGGGTGGAGGGACTGGGTGTCGCTGAAGGAAAACTAGCTGGTCAAGTGGGTAGAGGTGGGCATTAAGAGCACTGTGTGCCCCACTCCCCAG
Seq C2 exon
GATGGTGAGGTCTACTGCATTGATGCCCGTTACTATGGCAACATCAGCCGCTTCATTAACCACCTGTGCGACCCCAACATCATCCCTGTTCGGGTCTTCATGCTGCATCAAGACCTACGGTTCCCTCGCATCGCCTTCTTCAGCTCCAGGGACATCCGGACCGGGGAGGAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
NA
C2:
PF0085623=SET=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGTCGGGGAGCTGATCTC
R:
CGGTCCGGATGTCCCTGG
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]