GgaINT0126660 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2484168-2487287:+
Coord C1 exon
chr17:2484168-2484246
Coord A exon
chr17:2484247-2487111
Coord C2 exon
chr17:2487112-2487287
Length
2865 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TGCAACATTTCTCCCTCTAGGAC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GTATGTTGGCGAGCTGATATCCGACTCCGAAGCAGATGTCCGTGAAGAGGATTCCTACCTCTTCGACCTTGACAACAAG
Seq A exon
GTACTGTATCTAGGGAGGTGAACCCAAGGTCTTGTTTCTCCAAAGGAGCATGGAGAGTATTTGTCTCTATCTTGATGTACAGCGTGCTCTGAAAGCTTGGAAGCAGAGCTGCTTTCTCACTGGGTTTTGTTAGAAACGTAAGGTTGTGGAGATGAGTCTTTAGGGCTTGTTAAAATGGTAACAGAGCCCAGCAGTGCTGGGCCACAGCGTTATGTGCTGCCCACAGCAGGCTCAGTGCAAGATGCTTCCCTGTTAAAAATGCTCAAACGTCCTGAGTTCAGTTGTTCAGCTGCTGATATTCAGGTGTGTATACAGCAGTGTGCAGGCTTGCGGTGGTGTTGATTGGCAGCTCTGTAAGCTCTTCATGAAAAGATGTTGATGCATGAGCTGGAAAGCTGAAAGAGACACTGCTCCCTTACAAAGGGATCCTACAGACACCCTAGCAGGGACTTGAGGCTTCTGCTACTGCTGGTTGTCCTGTGCTGCTCTGCAGAGGGCTGACTCAGTGCAGAAATCTTGCTTTGAAAAGTGTGATCTGAAGCATCTGAGCGTCACTTCAGACTTTGCTTGGGAAGGGAGAAGAAGAGAAAGGTGAGCTGGGGAATCAGAGCAGTGGGGCGGCTTCCAAGGGAAGTTGTAAAGCAGTTTTTGTCTTGTGCCTGTCATCAGCTAGTCACAAAGAAGCTTTGCTTTGTTACTATAATTTTTCTTTTTCAGTGACAGGCATTAAAGTTGAAAAAAGATAAGTAGTGAGTCTTGTAGCAAGTCTGAAAACGGGGGTCAGACTGTAACTAAGAGGTTAAAGAGCAGCAAGGACTTCAAGCTGGCTTCTGCATTTATGAGCAAGAGACTGCCCGGGCCTTGCTTGGCCTGAAGGTTAACCCCTGGCTGGCTGTTTCAGGTAGAACATCTGGATTTTGTACAGGAACAAGCACACAGTTCTTCATCAGAGCACCTTCAGAGTAGAGCATCTGTGGAACAGGCAGCAAGTCTCTGAGGGGTCATTCAGAGAAACCCAAGGCAGTGCTGAGGGCAGGCAGAGCCTGATGGGTTCCCTCACATCCCCAGCAGTGGGAAAATATCACAGGTGAGGGCAGCATTAGGGCTCTGCTGTGTCCTGAAGGAGTGGCCTGAAGGAGGGGTTCATGCTGAAGCGTGTTGGGGACATCATTTCTAATGCCTTTGTTCCTTGAGCTGTGACTGGGGGCCATGTGTGTGGTGAGTCACTCAGCGTATCAGGTCTTGCAGTCACATCCCTTCCTGTGTCTGCAAGAGGGCAAACATGGAGCAGCCAGAACTCACTGCCTGTTCTGGGCCTTCAGGGAAGAATGCATAGCACAATAGATGCTTTCTGGGTTTCTACAGGTTAAACGGATCATTTTCTTGTCTCTGTACTAGAGATCCAGAAAAAACACACTATTTCTGATAGATATGAGGGTGAGTTTTATCTGGTGTGGTTGCTTTCTGTTGGTGTTAAGCTCCCCTTCCCACGTGTGGTCCTCAGCCTGACTGGGAACCCTTGGCATTGCAGCTGCTGAGCACTGAAAGCCATTTGAAATAAAATGTTCTTCATAGAATCGTTAAGATTGGCCAAGACCTTTATGATCATTAATCCAATGGTCAGCTCATCACCACCATGCCCACCAAAACACATCCCTAAGTGCCACATCCTAAGGTCCTTTTTAAGCACTGAAGATCTCAGGTGTAAGAAGTGATGCAGATGTCTGCAGAGTCCATCTATGTGCTCCGAAGGGGGAGTCTCCTCTTACCCCATTCTGCTCCTTCTCTGTTTGCCTCCAACGCTCCTGAAACTCTTGCAGCAAGGTGAGAAGCACTTTGTTCTGGGACTTATCCTCCTTGGCAGTGAGAATGCTGCCTGCGTTCCTCTCCTTTCTCAAGAAGAGCATCTTGGCTTGTATGGTGAAGAGCTCAGATCTTCCCAGATGGTCACTCAGGTGGAAGTGGCTGATGCTGTCCTTGCCAAAGGAAGGTGGCATTTCCACGGATGAAGCAGTGATGAGACTTAAATGCAATTGAAATCAGAGCTTGCACCACTCTGTGTAGCATGGGGCCATGTGGGTGATGCCTCCCCAATCATTGGGACATCTTCCCTGGGCTCCTGCACCAGCTGGGCAGTGTGATCTGACCCAGCTCATCCATTAAAGATTGCAAGGTGCTTGCCCAAAAGGGAATTTGAGCGCTGCTAATGGAGCCTTTTGCTTTTGGCCTCTTTGCAACAGAAATTAGCTTCTGTAATTAAAGTCTCTGCTTTGCACAGTCATTCTGTGCTGGAATAAAAAAGCCCTGAGGGGGGTTCTTTTATTTTCAAGGAAAACAAAGTATGACTGCTGTCTGGGCTCTCTGGAAAGGGAATTTCTGTGTTCTCACTTTCACTTTTATCTGCAAAAAAACTGTTTTCTCTAGGCTCTGGCTTAGTGTTTCCTGGCTGTCATGTTCAATTAGAGGACAGAACAGATGCCTGCTCCCCTGTCCAGTGGCTTTTACCCATAAGGTGTTGGTCTGCCCAGAACATAAATCCCGCTGCACCAAACCAGTGCTTCAGCAGAGCAGGTCTGGGGAGAGCTGATGTGCCAGCCAGTGTCAAGAGCATTTCTGAAAGGTCTTTTGACTCATGGGGGCACAGTGTTCCACGGGAGACTATTTTCAGGGCTGTGCTGAATGTAGAAGTATGTGTTTAGTCCGCTTAAGCCTTCCCTGGCCATTCTTCTTTTTGAGGCTCTGCAGAGTGTTAGCACGAGGGCTGGTAGTTCGGTCATGGCTTTCTTTTTTTTTTTTTAAACAAGTAGCAGTAATAACTCTAAAACCAATCTCATCTAATGAAACATGCAACATTTCTCCCTCTAG
Seq C2 exon
GACGGAGAGGTGTACTGCATAGATGCCCGTTTCTATGGCAACATCAGCCGCTTTATAAACCACCTCTGTGAGCCAAACCTCATTCCGGTGCGAGTCTTCATGTCTCACCAGGACCTCCGCTTCCCCAGGATCGCCTTCTTCAGCACGAGGCACATAGAGGCCGGAGAAGAAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
NA
C2:
PF0085623=SET=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]