DreINT0061792 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14551011-14553763:-
Coord C1 exon
chr21:14553685-14553763
Coord A exon
chr21:14551187-14553684
Coord C2 exon
chr21:14551011-14551186
Length
2498 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCG
5' ss Score
8.7
3' ss Seq
CAATTTATTTTCTGTCGCAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATACGTGGGTGAGATCATCTCTGACGCCGAAGCAGATGTCAGAGAGAATGACTCCTATCTTTTCAGTCTGGACAGCAAG
Seq A exon
GTATCGCCGTCCTCCCTTTCAAAATCACATTACCCCTGCTGTCTGCTCTCTCAGTGCTGGATTATCTGCATGCCCTCAAGCAAATGTTGTGCATATCCTTTAACTGACCCCTGTCAGCTCAAAGAAATGCTTTATTTCATAATAGCATGATACTTTTGATACTTGCACTTCAGTAGTCTTACATTGACAGTTGATAAAGGGATACAAGCTGGGTTGCACAACCACTTAAAAAAAAAAATTGTGATGTTGATTGATTACCATGCATTAAGTTTCATGTACAGTTGAAGTCAGAATTATTAACCCTCTAGAATTATTAGCCCCTCTTTATCTTTTTGGTTTCCCAATTTCTGCTTGACGGAAAAAAAAATCTTAACACATTACTAAACATAATAGTTTTAATAACTATCTACTAATACCTGATTTCTTTTATCTTTGGGTTGTATTGCGTTCAACCTGTGCTGAGCTGGGATCGAACCAGCTATTCTTTCTATGGGAGTTGGTTGCTCTAAAAAGGAGGCTGAAGATCATAGCCTCTTGCATCTGTAGCTAGAGCACCTTTTGAGGTTCGAGGTGTGAGGTTTACCTGCTTAGCACTTTGCTAGATGGCCTTCATTACGCTCACTCTCATCCCGGACGAGCCCCCACACAAGCAATCCACCTGTCCTACTGCACCCAACCCGTTCTGAGCTGGGATCGAACCGGCGATTATTTGCATGGGAGTCGGTTGCTCTAACAAGGAGGCTAAAGACCATGGCCTCTAGCATCTATAGCACCTTTAGAGGTCAGAGGACTGAGGTTTACCGGGATAACACTTTGCTAGGTTGCCTCCGTTACACACCCTAAACCTCACTTCCATCCTGGACGAGCCTCCACATGTAACTCTCTGGTCCTACTGCACCCAACCCATTCTGAGCTGGGATTGAACTGGTGATTATTTGCATGGGAGTCGGTTGCTATAACAAGGAGGCTAAAGACCGTGGCCTTTAGCGTCTGTTGCTAGAGCACCTTTAGAGATCAGACGAGTGAGGTTTACCTGCATAGCACTTCGCTGGCTGGCCTCTGTTACACTCAGACCCTAAACATCACTCACATCCCGGACAAGCCCCAACATGTAACCCACCAGACAAATTTTTCCAGCCCGCTCTGAGCTAGGATCGAACCGGCAAATTTATGCATGGGAGTCAGTTGCTCTAACATGGAGGCTAAAGACCATGGCCTCTAACATCTGTTGCTAGAGCACCTTTTAAGGTTAGAGGAGTGAGGTTTACCTGCATAGCACTTCGCTAGCTTGTCTTCGTTACACCCCCTAAACCTCACTTCCATCCTGGATGAGCCCCCACGTATAACCCACTGGTCCTACTTCACCCAACCCATTCTGAGCTGAGATCGAACTGGCGATTCTATGCATGGAAGTCGGTTACTCTAACAAGGAGGCTAAAGACTGTGGCCTCTAGCATCTGTCTCTTGAGCGCCTTTTGAGGTCATAGGAGTGAGGTTTACCTGCATAGCACTTCGCTAGCTGGCCTCCGTTACACTTACCACTAAACCTTACTTTCATCCCGGACGAGCCCCCAAATGTAACCCACCGGTTCTCTGCACCCAACTCGCTCTGAGCTGGGATCAAACCAGCAATACTATACATGGGAATCGGTTGCTCTAACAAGGAGGCTAAAGACCATGACCTATAGCATCTGTTGCTAGAGCACTTTGAGAGGTTAGAGGAGTGAGGTTTACCTGCATAGCACTTTGCTAGCTGGCCTCCATTACATATACATCTCAGAATCACTTAAAGAAAGAAATAATGATATTTAACAAGGATGTTTTCAAACAAAATACGCGTTGAGCATATTAGCAGGTCAGTAGATATTAATCAGCATTTTAGAATTCTTTCTGAAGGAGCATGTAGCACTGGAGACTGAACTTATAATTAGAAAAAAACATATTTAGAAGCATATTGTATGGAAATTTCACAGTATTGTTGTATTTTTGGTCAAATAAAAGTAAGCATATGAAACATTAAAGGGACAGTTCACCCAAAACTGAGTATTCGGTCATCATTTACGCTACCCTCATTTGTCATAAATCGATTTGAGATTTTTTTTTCTTTTGTTTTTTTATTTATAAAAGAAGTTAGTTTGAAAAATGTTGGAAACCACTGACTTTCATAGTATTTGTCTTTCTTCTTATGGAAGTCAATGGTCACCAGTTTCTAACATTCTTCAGAATATCTTCTTTTGTGTTTAACAGCAAAAAAATCCAAAAAGTTTTGGAAACACAAGCGTGAGTTAAATTTAATTTTTGTGTGAACTTTCCCCTTTAGACAGTTATAAATACCAACCATACACACATTTTTCTAGATAAAAACACAATTCAAACAGTTTTTCTTAATTATATTACATTTCTTAAACCCTGCTTTATTAAACCTTTCTAAATAAATCTCATATTTCATTCTCTGACATCCCTTGGCAAACACAATCTCAATTTATTTTCTGTCGCAG
Seq C2 exon
GTGGGTGACATGTACTGCGTTGATGCTCGTTTCTACGGGAACATCAGCCGGTTCATAAACCATCACTGTGAGCCCAATCTGCTCCCCTGTCGGGTGTTCACCTCTCACCAGGACCTCCGATTTCCTCACATCGCATTCTTCGCCTGCAAGAACATCAGTGCCGGAGATGAACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
NA
C2:
PF0085623=SET=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]