MmuINT0056009 @ mm10
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34912389-34912809:+
Coord C1 exon
chr17:34912389-34912467
Coord A exon
chr17:34912468-34912633
Coord C2 exon
chr17:34912634-34912809
Length
166 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CACTGTGTCTCCACCCCCAGGAT
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTATGTAGGAGAGCTGATCTCTGATGCCGAGGCTGATGTGAGAGAGGATGATTCTTACCTCTTCGATTTAGATAACAAG
Seq A exon
GTGGGATGCAGCACCTCTGCCCTCAACTACCAAAGGCTGCTTTGTGCAGCCACCTGTAACATCTGGGACTGGAAGCCTGGGTGGAGGGACTGGGTGTCACTGCAGGAACACTAGCCAGGCAAGTGGATAGAAGTGGATATTAAGAACACTGTGTCTCCACCCCCAG
Seq C2 exon
GATGGCGAGGTTTACTGCATTGATGCCCGTTACTATGGCAACATCAGCCGATTCATTAACCACCTGTGTGACCCCAACATCATCCCTGTCCGGGTTTTCATGCTGCACCAAGATCTACGGTTCCCACGCATTGCCTTCTTCAGCTCCAGGGACATCCGGACTGGGGAGGAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787:ENSMUST00000013931:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(24.3=100)
A:
NA
C2:
PF0085623=SET=FE(54.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGATCTCTGATGCCGAG
R:
CCAGCTCCTCCCCAGTCC
Band lengths:
244-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types