DreINT0014482 @ danRer10
Intron Retention
Gene
ENSDARG00000094408 | MFAP4 (10 of 14)
Description
microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:HGNC:7035]
Coordinates
chr1:58363435-58364116:-
Coord C1 exon
chr1:58363949-58364116
Coord A exon
chr1:58363799-58363948
Coord C2 exon
chr1:58363435-58363798
Length
150 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGTTGTCTTCCTCACCGCAGGCG
3' ss Score
10.89
Exon sequences
Seq C1 exon
GGCTGGAGAACCTCTACCAGCTGACACGCCACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAAAGTTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTCTGAAGCTGAAGGGTATAAACTGCAGGTCTCTGGATTCACTGATGGAGGAGCAG
Seq A exon
GTACTGTACGACACTTTTAATAACATTCATGCTCTTGATTAAATGAACTGAATAATGATGCACTTTCAAATGTAAGATCACTGTAAGAATTCTCCAATTCTGTATGCTAGTAAGATGTTGATATCCTCAATGTTGTCTTCCTCACCGCAG
Seq C2 exon
GCGACTCTTTATCCGCCCATAATGATCGGAAGTTCAGCACTCTTGACAAAGACCAAGACCTCTATGAAAAGAACTGCGCCAGATATTTCCTTGGGGGATTTTGGTATACAGTAGGCTGTCACTATACAAACCCAAATGGGATGTATTTATGGGGAGAACACAACACACGTTACGCTATTGGAGTGGTTTGGTCAACCTGGAAGAATAGTTTCACTCTCAGCATGAAAACCTTCCTCATGAAGATCAAGCCTGTGTCTTAAAACCATTAGTTTTGCACAAACCCAACACACTGATTTCATTAGTGGACAAGAGTAAAAGTTTAAGATTTTACTTTCCTCAGTGTAACTAATGATGTTTCTGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094408:ENSDART00000138870:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(38.0=96.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGTCCTTCTCTGTGGGTT
R:
AACGTGTGTTGTGTTCTCCCC
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]