BtaINT0092107 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006187 | MFAP4
Description
Bos taurus microfibrillar-associated protein 4 (MFAP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001080217]
Coordinates
chr19:34686636-34687892:+
Coord C1 exon
chr19:34686636-34686818
Coord A exon
chr19:34686819-34686961
Coord C2 exon
chr19:34686962-34687892
Length
143 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GTGCCCCTCCCCTCCGCCAGGCG
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGCTCCAGAACATGCACCTGCTGACACTGAAGCAGAAGTACGAGCTGCGGGTGGACCTGGAGGACTTTGAGAACAACACGGCCTTTGCCAAGTACGCTGACTTCTCTATCTCACCCAATGCTGTCAGCGCAGAGGAGGATGGCTACACCCTCTATGTGTCGGGCTTTGAGGATGGCGGGGCAG
Seq A exon
GTACACTCTGCCAGCTGTGTGGGGCTGGGGATGGGGAAGGGCACTGGGCCCAAGCACCGCCACCCCGGCCACCCTGCGTCTGGCTCGGGGGGCCCTCCCAGGGCCTCCTGCCTCAGCTGCCCCGTGCCCCTCCCCTCCGCCAG
Seq C2 exon
GCGACTCGCTGACCTACCACAGCGGCCAGAAGTTCTCCACCTTTGACCGAGACCAGGACCTCTTCGTGCAGAACTGTGCAGCACTCTCCTCGGGCGCCTTCTGGTTCCGCAGCTGCCACTTCGCCAACCTCAACGGCTTCTACCTGGGCGGCTCCCACCTCTCCTACGCCAATGGCATCAACTGGGCCCAGTGGAAGGGCTTCTACTACTCGCTCAAGCGCACCGAAATGAAGATCCGCCGGGCCTGAGGGGCTGGCCCCCTCGAGGCCCACCGCCCCTGCCCCCATCCCACCCGGCCCACCGGCAGCTCTGCTGCTCTCAGCACCGCCTCGGCCAGGCCCCCATGGTTCCAGCCAGACGTCCCCATCACATCCCTGGCATCCACCTCTCGGCCAGGCCCCTGCTCCCTGCCACCCGAGGCTATGCTGCCGCAGCGTCCCAAACCTCCAAAAGGCACCACGGTCCAGCCCGGACTCGGACCCTGTCCCGAAGGACATGGGGCTGTGTCCCACTTTAGCCAGCTTCTTGACCGCGGCCTCTGCCGGCCGAGCCTGTAGACCTCTCCTGGCATCTGCCAGGCCACCTGCGTGTGGCCACTGCTGCCACACCCCAGCAGTCCCACTGGCTGGCCCTTCACTTTCCTCCCACCCCCGTGTTCCCCAGGGGTGAGCACCACAGCCCGGCCCCATTGCACTCACGCTCAGCGGCCCCCTGCCTGCCTGACCCAGGCATCTGAAGCGCAACACCCAAACTGTATTTCACCACAGCTCCAACAGGCCACCCTAAAATGCCACAGCCAAGGCGGGCACACATGTGAGGTCCCCCCACCCGCCCCGGGGGTGAGTGTGACTGTGCTAGGGTCAGAGGACTGCCTCTGTGGGGCTGGGAGCAGGTGGGAGTGGAGGTCTCAATAAACCTCAGGACCTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006187:ENSBTAT00000008130:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(37.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGCCAAGTACGCTGACT
R:
GGTAGAAGCCGTTGAGGTTGG
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development