MmuINT0098115 @ mm9
Intron Retention
Gene
ENSMUSG00000042436 | Mfap4
Description
microfibrillar-associated protein 4 [Source:MGI Symbol;Acc:MGI:1342276]
Coordinates
chr11:61300581-61302206:+
Coord C1 exon
chr11:61300581-61300763
Coord A exon
chr11:61300764-61301255
Coord C2 exon
chr11:61301256-61302206
Length
492 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GTCTTCCTCCCTCTTGCCAGGTG
3' ss Score
11.52
Exon sequences
Seq C1 exon
GGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGCGTGGACTTGGAAGACTTTGAGAACAACACAGCCTATGCCAAGTACATTGACTTCTCCATCTCCCCCAACGCCATCAGTGCTGAGGAGGATGGCTATACCCTCTACGTGGCTGGCTTCGAGGATGGCGGGGCAG
Seq A exon
GTACCCCTCTCAGCTTCTTCAGGGGCAGTGGCGGGGGGGGGGGGGGTAGGGGGAGTCAGTAAGGGGTAGGATCAGTAGGGGGTGGGGCGGGTACCTCTCTCAACTTCTTCAGGGGCAGTGGTGGGGGAGGGGGTGGGGTCAGTAGGGAGTGGGGTCAGTAGGGATTGGGGTCAGTAACGTAGGATTGGCCCTGCTCCATTGGTTCCTAAGGCCCCTCCCTCAACCCTTCTGGGTGTAGAAGAGTCATAGCTCTCCACAGACCAACTTCAGCTACAGGAACCTCAGCCCCAGGGAACAGCCACCCTGGCCCTGCTCCAAGTGGCCCTGCTCCAGGCAGCTCTGCAGAAGAACAGCTGTTCTCTTTGTGGCTCAGGGAGGGTGCCCCCCATCCGATAGGATGCCACATCATGTCATCCCAAGAGTCATTCATCAAGTGCTGTCATCCTCTCAGCTCCTGGCCTCAGTTTTTCTAGTCTTCCTCCCTCTTGCCAG
Seq C2 exon
GTGACTCACTGTCCTACCACAGTGGCCAGAAGTTCTCCACCTTTGATCGGGACCAGGACCTCTTCGTGCAGAACTGTGCAGCCCTCTCCTCAGGAGCCTTCTGGTTCCGAAGCTGCCATTTCGCCAATCTCAACGGTTTCTACCTGGGTGGTTCCCATCTCTCCTATGCCAATGGCATCAATTGGGCCCAATGGAAAGGCTTCTATTACTCCCTCAAGCGCACGGAGATGAAAATTCGTCGGGCCTGAGGGGCTGGCCCAAGCAGGCCCCATCTTTCCCCTGAAGTCCCAAGGGTCCATGTTCTCCCTCCACGCTTTACCCACAATTCCTGAGCACCAGCCATGCCCTGGCAAATCCCTGTCCCACATACAGCCACGCCCTGATGCATTCCACCTGAGGCTAGGCTGTCAGCAGCCCTCCAGGCCTTTCTGTGGCTGAGCCATCCTAGCCTGGATCTGGCTGAAATCCATTAAAAACTCCAAGTTGCTTCTACCCCTTCACGACAGCTGAAAGCCAGAAGCTACCTTCTAGCTGCCAGCTTTTGCACCCCACCTCAGCAGTTTCCTTACTGCAGAGCCTTCTGTTTGGGGCTACCCTCGACAGAGTCATGCAGCACCTGTGGCATTGCCAATCAGCTCTTGCACACTGCCACACCCCAGCACTCACATAGCTCTCCTCAGAATACTTCCTACCTTGGCCTCATCACTTTACTCCCTACGTGAGCATCATGGAGCCCAATCCCATCTGCCTTCACTCATCCCTCAAAATTCACCACCAAAACAATACTCACCACGGCTACTGCTCAACTCTGAAGTCGTCATGGCAAAGATAGGCTTGTTGACTTGGTCCCCTACTTGCCCTAGCGATCGTCATGAGAGGCAGCAGGGATCAATATGTGGGGCTGGAAGTGGGTGGGTAGCAGAGGTCTCAATAAACTTCAGGATCTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042436-Mfap4:NM_029568:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(55.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATACCCTCTACGTGGC
R:
ACATGGACCCTTGGGACTTCA
Band lengths:
345-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: