HsaINT0102274 @ hg19
Intron Retention
Gene
ENSG00000166482 | MFAP4
Description
microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:7035]
Coordinates
chr17:19286755-19288594:-
Coord C1 exon
chr17:19288412-19288594
Coord A exon
chr17:19288023-19288411
Coord C2 exon
chr17:19286755-19288022
Length
389 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
ACCCTTCTCTCCTCTGCCAGGTG
3' ss Score
12.16
Exon sequences
Seq C1 exon
GGCTGCAGAACATGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGAGTGGACTTGGAGGACTTTGAGAACAACACGGCCTATGCCAAGTACGCTGACTTCTCCATCTCCCCGAACGCGGTCAGCGCAGAGGAGGATGGCTACACCCTCTTTGTGGCAGGCTTTGAGGATGGCGGGGCAG
Seq A exon
GTATAACCCGCTGTTAGCTTTGGGAGGGGCTGTGAGGGGAAAGAAGGCAGGGCTGGCCCTGCCCAGTCAGCCCCAACCTCCTTCAGGCCCCTCCTTCAACCCTTCTGGATCTGGAAGGGCCACAGCTGGCTCCAAACAAGCTCAAACCAGCTTGGGCCTCAGCCCTGGGGAGCAGCCATCCTGGCCCTGCTCCAGGCAACTCTGTGGTGGAGCAGCTGTTTCTCTTCATTGCAGAAGCACATCAACCCAACATCTGGCTCAGGGAGGGTGCCCCCATCCCGCCAGGCTGCCACGTGATATCTCTCACAGTCGTCATTGTCACCCTCTCCCGGCCAGCTCGGGGCTCAGTTCCCTGCCTCAGCAGCCCCAACCCTTCTCTCCTCTGCCAG
Seq C2 exon
GTGACTCCCTGTCCTACCACAGTGGCCAGAAGTTCTCTACCTTCGACCGGGACCAGGACCTCTTTGTGCAGAACTGCGCAGCTCTCTCCTCAGGAGCCTTCTGGTTCCGCAGCTGCCACTTTGCCAACCTCAATGGCTTCTACCTAGGTGGCTCCCACCTCTCTTATGCCAATGGCATCAACTGGGCCCAGTGGAAGGGCTTCTACTACTCCCTCAAACGCACTGAGATGAAAATCCGCCGGGCCTGAAGGGCTGGCCCCCTCAGGCACCTTTCCTCCCCTGGACACCCATGGTCTCCATGAGTGCTCCCTCTGCTGCCCCTGATGCATGCTTCTGCTGATTCCCGAGCACCAACTCCTTACAAGGGGGCCTTGTGGCTCTCAGCCATGCCACATCCCTGTCACACACCCAGGGCATCCATTCCTAAGCCAGACCCGGCTCCCCTACACCTGAAGTTACACTGCCAGCAGTTCCCCAGGCCTCTTCCGAGAGGCACATGGTTCTAGCCTGGACCTGGCTGGGCTCCATGAGAATGAGTTGCCTCCAACCTGTCCCAACAGCTGACAGCCAGGAGCCACTCTCCCAGCTGCAGGCCTTTGTGGTCCATCTTGTCCTGCTTCCTCACTGTGGACCCCTGTCTGGGCCACCCTAGTGTGCTAAGCTGAGCAGTGCAGTGTGAACAGGGCCCATGGTGTATTCTAGGCCACAGCCCAGCACTCCTCTGGGCTGCTCTCAAACCATGTCCCATCTTCAGCATCCCTCCCACCAACTTACTCCCCTGTGGTGAGTACCGTGGAACCCCAGCCCACCTCACTATCATACTCAGCTTCCCCTGATGGCCCATCCCAGCCCCTGAAGCTCTATGCCAAGAACACAGCTACCGCACACCACCCTGAAACAGCCACAGCCAAGGTAGGCATGCATATGAGGTCTTCCCCATACCCTCTGGGTGTTGAGAGGTTTAGCCACATGAGGGAGCAGAGGACAATCTCTGCAGGGCTGGGAGTGGGTAGGGACTGAAGGTCTCAATAAACCTTCAGAACCTGAATGAACTGGCTTCATACACACAAACATATTTGTTTATCCCCCAAATGTAGGCACCTGGCTCCTCCTTGCTCCCCTGCTGATGGTGTCCTACCCCGAACTCCAAAAATTACACCTGGAGTCAGGTGCAGAAGGGAACCTTGTATTTCACAGGCCTCATTTTGATGGCAAAAAGACAGTGTAATAATAACATAATAATAATAAAAATATAATACTGAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166482-MFAP4:NM_001198695:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(37.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGGCAGGCTTTGAGGA
R:
AGAGGGAGCACTCATGGAGAC
Band lengths:
345-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)