Special

DreINT0014980 @ danRer10

Intron Retention

Gene
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25148586-25149658:-
Coord C1 exon
chr19:25149513-25149658
Coord A exon
chr19:25148701-25149512
Coord C2 exon
chr19:25148586-25148700
Length
812 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTCCATTTTCTAACTGCAGTTT
3' ss Score
8.3
Exon sequences
Seq C1 exon
GCTTTATATGAGAGGTTATTTGCATGGATTGTTGGTCGGATCAATGGCGTTATTGAAGTAAAAGACTACAATCCTGCCCTCCACGGGAAGAACACTGTTATTGGTGTGCTGGACATTTATGGCTTTGAGATCTTTGACAATAACAG
Seq A exon
GTCAGTGTTATTTTTACCTTGCGTAGTTGTATACCCTATAATGCCTACTGTTTTATTCATTTCAAAGCAAACAAGGTTTCTAATGGTACCTTAGTTTACATAACAACAATATTGTTAAAATGATCAACATTCACACAGTTGACACCTCAAGAACTACTAAAATGCTGTATTATGCATGCCAGGCCAGTAGATGGCGGCATCACATTGGTAAGAAACACTATATATGAAAAGAACACAGTAACAAAGAAAAAGAACAGTTTTGAAGTTCAACAATTGTAAACACAAATTATTTTTTGATACACTAATCATACTTTAATCATAGTATTTGTAGTACTGTAATTGTACAAGTGGTAATCTATACAGCAAAATACCCTGTTCCCTATAACCTACTATAACCATAGTTTTACTATAATTAAACAATGATTTATTTACAATAAAATCATGGTTAATGATTGGTCAAAATGCATGGAAAAAATTTATTTTTTAGTTGGAAAGTCATGTAAACAAATTAATCATTATAAAACTTTACTGAAAAAACAGTTGAACACACTCCTTCATGTCATGATACACACGCCTTGTTGCTGTCAAGTCTTTGCTAGCATCTATAACACATTAATAACTTATTGTTAACACTGTTACGAATACATTATTAAAGTATTATTATTTTGTAATATATATTTCAAGATGAACACTAACTACACTGGTTTTATTTAAATATTATCCATATACATATTTTGTCATACATATTAGGCTTCACAGGGTTAATATCACTATAGCTGAAACTGATTGATTTTTCCATTTTCTAACTGCAG
Seq C2 exon
TTTTGAACAGTTTTGCATTAACTACTGCAATGAAAAGCTACAGCAGCTCTTCATTGAGCTAATTCTGCGACAGGAGCAGGAGGAGTACCAGAGAGAGGGAATCACGTGGCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104:ENSDART00000142774:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGGTTATTTGCATGGATTGT
R:
ATGTTGCCACGTGATTCCCTC
Band lengths:
254-1066
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]