GgaINT0097026 @ galGal3
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
NA
Coordinates
chr2:3957777-3958725:+
Coord C1 exon
chr2:3957777-3957934
Coord A exon
chr2:3957935-3958604
Coord C2 exon
chr2:3958605-3958725
Length
670 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
AACCTGACCCCCGTCCCCAGCTT
3' ss Score
5.77
Exon sequences
Seq C1 exon
CCCTGTCCCCAGGCCATATACGAGCGGCTCTTTGGATGGATCGTGGGGGGCATCAATGCCAGCATCACCGCACGTGGTTACGATGTCCGGCAGCATGGCAAGAGCACCGTCATTGGCGTCCTTGACATCTATGGCTTCGAGATCTTTGACACCAACAG
Seq A exon
GTGACACGGACCCCACGCTGGAAGGGGATGGGGAATGGGGACACGTGATGGGGGTGGAGGAACAGGTGGATGGGATGGAATGGATATGTAAAGAAGATATGGGATGGGAAAGACACATGGAGGAGATGAGACTTGGAGGGGATGTGAGGGGACTGGGGATGAGTTGGATGTGGTTGAGACAAGGGGACACCTGGGAGGGGCACGTGGAGGGGACAGAGTTTGGGAGTAACACACGGAGCAGATGGCTGGGGAAGGACACATAGAGGGGATGGGATCCAAGAGGGACAAGTGAAGAGGACAGGGGGACACCTGGGAGGGACATGTGGAAGATGTTGGGGATGGGAAGGACATGTGAAAGGGGTAGAGACACCTGGGGGGGACACGTGGGTGGGACAGAGCTTGGGAGGGACATGTGGAAGGGATGGGGGATGGGAAGGACATGGGGAAGGGAGATGGACACCTGGGAGAGACATAAGGAGGAGATGGCTTGGGAAGGACATATAGAGGGGATGGGACCCAGGAGAGACATGGAGGGGACAAGGCTTGGGAGGCACAACTGGAGGGGATGATGTGAGAAGGGCATATGGAAAGGTGGGACCAGAGTGGCATGGTGGCCAGGGGGCATGGTGTGGGGCCAGGTGCCAGCGGCCAACCTGACCCCCGTCCCCAG
Seq C2 exon
CTTTGAACAGTTCTGCATCAACTACTGCAACGAGAAGCTGCAGCAGCTTTTCATCGAGCTCATCCTGAGGCAGGAGCAAGCGGAGTACCAGCGAGAGGGCATCACCTGGCAGAATGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(15.5=96.2)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCCAGGCCATATACGAG
R:
TCACATTCTGCCAGGTGATGC
Band lengths:
274-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]